PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G082000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TCP
Protein Properties Length: 418aa    MW: 43003.5 Da    PI: 9.1258
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G082000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.18.9e-40652512136
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 
                         a+k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++t+eWLlqqa+pa+ ++tg+++++a+++  + s +ssas  ss    
  Brast07G082000.1.p  65 APKRTTSKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKTDGETVEWLLQQAEPAVVAATGSGTIPANFTsLNISLRSSASLLSSVpah 155
                         89*******************************************************************9998777777777733333466 PP

                 TCP  89 ............................................kaaksaakskksqksaasalnlakesrakarar...are.rtrekmr 131
                                                                     ++++s++   + ++ aa+ l+++ +s+++a a+   +r+ r++++m+
  Brast07G082000.1.p 156 lraaglqmgpgprfggggaraeawdrfmglggpfdggpaasaatSSSSSSPLLLSFHSGAAAGLDVSPSSSSSAAANndlSRKrRWEQEMQ 246
                         6667888888899999999999999999999999999999999744444443333333344467777766655555555767768888888 PP

                 TCP 132 iknkl 136
                          ++++
  Brast07G082000.1.p 247 HQQQQ 251
                         77654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-4269252IPR005333Transcription factor, TCP
PROSITE profilePS5136926.93271125IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MDVAGDAGGG RRPNFPLQLL EKKEDHQYHL QPCSTSPALG SGGGGTTMNN GGLQQQQQVA  60
RTTKAPKRTT SKDRHTKVDG RGRRIRMPAV CAARVFQLTR ELGHKTDGET VEWLLQQAEP  120
AVVAATGSGT IPANFTSLNI SLRSSASLLS SVPAHLRAAG LQMGPGPRFG GGGARAEAWD  180
RFMGLGGPFD GGPAASAATS SSSSSPLLLS FHSGAAAGLD VSPSSSSSAA ANNDLSRKRR  240
WEQEMQHQQQ QMQYQQQMAG YTVTQSQMPG GTVWMVPTTT SNAQPGATQG GGGESIWTTT  300
AFPQPGSGGG VYRGVPSGLH FMNLPAPMAL LPGQAAQHLG LGQAQPLGGG SAGEGHLGIL  360
AALNAYRGQQ HAASEVTVAG QHNGGAAEGG GGQHHHHQHQ QHGGGERNES MSASDDS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G082000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126102e-85CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755137.11e-162transcription factor TCP15
TrEMBLA0A2K2DPG41e-158A0A2K2DPG4_BRADI; Uncharacterized protein
STRINGBRADI1G45220.11e-161(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37443479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.19e-41TCP family protein