PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast07G078400.2.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

MYB_related

Protein Properties

Length: 293aa MW: 32525 Da PI: 6.301

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast07G078400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56	9.3e-18	39	84	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E++ +++++ lG++ W++Ia++++ gRt++++k++w+++l Brast07G078400.2.p 39 RGKFSQDEEQTILQLHSILGNK-WSAIAKHLP-GRTDNEIKNFWNTHL 84 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	4.344	15	33	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.8E-11	19	46	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.99E-23	19	93	IPR009057	Homeodomain-like
PROSITE profile	PS51294	27.224	34	88	IPR017930	Myb domain
SMART	SM00717	4.6E-17	38	86	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-16	39	84	IPR001005	SANT/Myb domain
CDD	cd00167	2.31E-13	41	84	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.6E-23	47	85	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MHMPFNENFA LYIFIAGLNR CGKSCRLRWT NYLKPDIKRG KFSQDEEQTI LQLHSILGNK 60 WSAIAKHLPG RTDNEIKNFW NTHLRKKLIK MGIDPMTHRP RTDFFSALPQ LIALANFRQF 120 VEQQPLDDQT AWLQSEAVQA AKFQYVQSLL HSAASIVASP STTSSSFNPL TTDLEQISFL 180 SPPQMLSPSV LEGIGGTELA GQAPQNQMPS ISFDHSIGNI NVKSGEQCHG EGENISQKRM 240 LLSENSLPPL ADMPASNTCN ISSSSNCNCI SSPLPSWSEI LLDEELMSDC LM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-20	20	88	40	108	B-MYB
1gv2_A	2e-20	20	88	37	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	9e-20	20	88	91	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	9e-20	20	88	91	159	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	5e-20	20	88	60	128	MYB TRANSFORMING PROTEIN
1mse_C	2e-20	20	88	37	105	C-Myb DNA-Binding Domain
1msf_C	2e-20	20	88	37	105	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast07G078400.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003560902.1	0.0	transcription factor MYB93
Swissprot	Q9S9Z2	4e-70	MYB93_ARATH; Transcription factor MYB93
TrEMBL	I1GZN9	0.0	I1GZN9_BRADI; Uncharacterized protein
STRING	BRADI1G45510.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	3e-67	myb domain protein 93

Link Out ? help Back to Top
Phytozome	Brast07G078400.2.p

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]