PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G078400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 321aa    MW: 35560.3 Da    PI: 6.7777
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G078400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.14.8e-191461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WTteEde+l ++++++G g+W++ ++  g++R++k+c++rw +yl
  Brast07G078400.1.p 14 KGPWTTEEDEKLMNYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                        79********************************************97 PP
2Myb_DNA-binding55.81.1e-1767112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+++++E++ +++++  lG++ W++Ia++++ gRt++++k++w+++l
  Brast07G078400.1.p  67 RGKFSQDEEQTILQLHSILGNK-WSAIAKHLP-GRTDNEIKNFWNTHL 112
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.636961IPR017930Myb domain
SuperFamilySSF466892.82E-3211108IPR009057Homeodomain-like
SMARTSM007179.7E-151363IPR001005SANT/Myb domain
PfamPF002491.9E-171461IPR001005SANT/Myb domain
CDDcd001677.92E-121661No hitNo description
PROSITE profilePS5129427.22462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2765117IPR009057Homeodomain-like
SMARTSM007174.6E-1766114IPR001005SANT/Myb domain
PfamPF002491.2E-1667112IPR001005SANT/Myb domain
CDDcd001673.87E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGRPPCSDDN GLKKGPWTTE EDEKLMNYIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LKPDIKRGKF SQDEEQTILQ LHSILGNKWS AIAKHLPGRT DNEIKNFWNT HLRKKLIKMG  120
IDPMTHRPRT DFFSALPQLI ALANFRQFVE QQPLDDQTAW LQSEAVQAAK FQYVQSLLHS  180
AASIVASPST TSSSFNPLTT DLEQISFLSP PQMLSPSVLE GIGGTELAGQ APQNQMPSIS  240
FDHSIGNINV KSGEQCHGEG ENISQKRMLL SENSLPPLAD MPASNTCNIS SSSNCNCISS  300
PLPSWSEILL DEELMSDCLM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C8e-31121162105C-Myb DNA-Binding Domain
1msf_C8e-31121162105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G078400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP3304820.0KP330482.1 Triticum aestivum MYB transcription factor SM152-3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560902.10.0transcription factor MYB93
SwissprotQ9S9Z21e-100MYB93_ARATH; Transcription factor MYB93
TrEMBLI1GZN80.0I1GZN8_BRADI; Uncharacterized protein
STRINGBRADI1G45510.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112637132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.12e-97myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]