PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G071400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 154aa    MW: 16719.1 Da    PI: 9.585
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G071400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.54.8e-0876116954
                         HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          r RR+r+ +++  L++l+P  a      +l+ a++Le+Av+Y++ L
  Brast07G071400.1.p  76 ARLRRERVSQRMRALQRLVPGgA------RLDTASMLEEAVRYVRFL 116
                         699*****************966......9**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.48167116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-970121No hitNo description
Gene3DG3DSA:4.10.280.106.9E-1272135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-1272129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-1173122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-577116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MDLDTAMDMM NQEQLMNTIA QLDSALASYL APSPSTSPPQ VHHRPVTTTP MPVPPSGRRR  60
RGAGARVSSE PQSVAARLRR ERVSQRMRAL QRLVPGGARL DTASMLEEAV RYVRFLKSHV  120
QALEQAAAAM DADAVAAEGF YSSSCCPYYR LAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17681RLRRER
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269|PubMed:21549224}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G071400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126142e-76CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229905.21e-52transcription factor HEC2
SwissprotA0A0P0WQ902e-22LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBLM0W4237e-54M0W423_HORVV; Uncharacterized protein
STRINGMLOC_4332.11e-54(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP161101111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.16e-19bHLH family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]