PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast07G064000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 162aa MW: 18828.9 Da PI: 10.0506 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37.2 | 3.8e-12 | 11 | 52 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i n+++r t kR+ + KK +EL +LCd+ ++++++ ++ Brast07G064000.1.p 11 IVNNTKRRATMKKRLPSLVKKISELAILCDIPACLVVYRPDE 52 7799*********************************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.5E-11 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.082 | 1 | 48 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.59E-20 | 3 | 93 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 7.74E-20 | 3 | 85 | No hit | No description |
PRINTS | PR00404 | 4.3E-6 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.9E-12 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-6 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MPRGKVKIQW IVNNTKRRAT MKKRLPSLVK KISELAILCD IPACLVVYRP DEEQPVVWPS 60 TGEVTSVVQN YYDLPKSKKL EKRLDAKSFH QQQVDKEKAE LFNAHRDNYD REINLIVKQF 120 FAHCRYSFED LGTEVLIHLK LKVKEHLQAI DTRLQIRVGS T* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast07G064000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF469351 | 3e-57 | KF469351.1 Brachypodium distachyon MADS-box transcription factor 57 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024312442.1 | 9e-91 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A0Q3K3Y7 | 2e-89 | A0A0Q3K3Y7_BRADI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06500.1 | 4e-22 | AGAMOUS-like 96 |
Link Out ? help Back to Top | |
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Phytozome | Brast07G064000.1.p |