PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G063600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 483aa    MW: 51734.7 Da    PI: 4.7816
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G063600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-11332377555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h+++Er RR++i +++ +L+el+P++      K +K+++L + ++Y+k Lq
  Brast07G063600.1.p 332 HSIAERLRREKISERMKNLQELVPNS-----NKADKSSMLDEIIDYVKFLQ 377
                         99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-16325387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.35E-12325381No hitNo description
PROSITE profilePS5088816.876327376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-16329386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-8332377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-13333382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MDYSAGSFFS SWPANSASEN YSFVDGSVGS YAEEGSMIPA GYFMRGGSDH NLMFNEHEKN  60
PTVLTNGCLP YNAQTDLLSS EILSTGKPSD NIVEFQQFQD NGNLQSNLIP QATLHCNPTP  120
GTFDPPLDTS GLLELPHALS SSIESNDSEI SAFLADVQAV SSASTLCSTF QNVSSYMEPV  180
NVEAFGFQGV QNAAMFNKTS HSNGNLPVFD KATMASIHDC REFVNGSISS FAIAQQSQLA  240
TGGFKAEQQE QNTMRNIPLP SFVSGGQMAV TEAQQALIPS KITSLVHNNK SEYPVPIGHS  300
SDVQPQANSA HGNSVSAKPR ARARRGQATD PHSIAERLRR EKISERMKNL QELVPNSNKA  360
DKSSMLDEII DYVKFLQLQV KVLSMSRLGA PGAVLPLLRE SQTESHSNSS LSGTTISQGL  420
LDVADPEDSA VFEQEVIKLM ETSITSAMQF LQNKGLCLMP IALASAISNQ KGVSAAAIPP  480
GQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G063600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227911.10.0uncharacterized protein LOC100841109
TrEMBLI1H0420.0I1H042_BRADI; Uncharacterized protein
STRINGBRADI1G46700.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.15e-57LJRHL1-like 2