PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast07G056600.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 395aa MW: 39438.8 Da PI: 6.1569

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast07G056600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.3	4.8e-12	200	245	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Brast07G056600.1.p 200 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 245 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.2E-17	193	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.36E-13	193	249	No hit	No description
PROSITE profile	PS50888	17.282	195	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.6E-16	197	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-9	200	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-13	201	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MAGGGGDGGG GAQDDFFDQM LSTLPSAWGD LGAGGKSPWE LPAGGEDLSA FDESALLASR 60 LRQHQIGGGG GEGKPAVMLQ LTDLQRQQQG EESGGFSPLP LFTDRSPPPS SARDDMDGGF 120 IKSPNNATGG DHAMFNGFGA AHGGAGAVQP PFGQGGSMSG QSFGGTAASG GTAAPASSGG 180 AAPPRQTRVR ARRGQATDPH SIAERLRRER IAERMKSLQE LVPNANKTDK ASMLDEIIDY 240 VKFLQLQVKV LSMSRLGGAA GMAPLVASMS SEANSSNAKS GGGAGAAATT NGNGGEKSGG 300 GAGLRVTEQQ VAKMMEEDMG TAMQYLQGKG LCLMPISLAS AISSATTTTG ASPASLLARP 360 PPVRSSPQAA SGAAGAGDDA VARPVKVDAN GGKQ*

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MAGGGGDGGG GAQDDFFDQM LSTLPSAWGD LGAGGKSPWE LPAGGEDLSA FDESALLASR  60
LRQHQIGGGG GEGKPAVMLQ LTDLQRQQQG EESGGFSPLP LFTDRSPPPS SARDDMDGGF  120
IKSPNNATGG DHAMFNGFGA AHGGAGAVQP PFGQGGSMSG QSFGGTAASG GTAAPASSGG  180
AAPPRQTRVR ARRGQATDPH SIAERLRRER IAERMKSLQE LVPNANKTDK ASMLDEIIDY  240
VKFLQLQVKV LSMSRLGGAA GMAPLVASMS SEANSSNAKS GGGAGAAATT NGNGGEKSGG  300
GAGLRVTEQQ VAKMMEEDMG TAMQYLQGKG LCLMPISLAS AISSATTTTG ASPASLLARP  360
PPVRSSPQAA SGAAGAGDDA VARPVKVDAN GGKQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	204	209	RLRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast07G056600.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003560994.1	0.0	transcription factor bHLH82
Swissprot	Q9ZUG9	3e-74	BH066_ARATH; Transcription factor bHLH66
TrEMBL	I1H0C6	0.0	I1H0C6_BRADI; Uncharacterized protein
STRING	BRADI1G47350.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	8e-47	LJRHL1-like 3

Link Out ? help Back to Top
Phytozome	Brast07G056600.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]