PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G054500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 671aa    MW: 71576.9 Da    PI: 5.3328
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G054500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.11.6e-11371418347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         +W+  E+e l ++v q+G+ +Wk I  + +    gRt+ ++k++w++ 
  Brast07G054500.1.p 371 KWSSVEEETLRKGVDQFGSSNWKDILIHNPdvfIGRTAVDLKDKWRNM 418
                         8*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.495364423IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-12364420IPR009057Homeodomain-like
SuperFamilySSF466891.3E-14366438IPR009057Homeodomain-like
SMARTSM007175.5E-7368421IPR001005SANT/Myb domain
CDDcd116602.39E-18370420No hitNo description
PfamPF002491.7E-9371418IPR001005SANT/Myb domain
Gene3DG3DSA:3.30.9.101.1E-7474595No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MPSLTPADAS LILDHVVGDP STPAPAANAL LAALPFPSRP TPRLLRSVLL RRLGSDPVSS  60
AALDSLQLLA SLPTPAPTVA AAHLAVAAYL AASAPDFDAA AGALFARPDG RARRAVDEGG  120
DPALVSSEAV AVADQFEAAI GNAFSQSVLR GLWGGRAAAE ERVRELLVAE WAAIGPSQLE  180
VAAERIVGDG AVETWGAAEE SIRAKYRMLA GEERAREILS RLEEPSSNVN PISTPEVHKV  240
LDALKSSCAD LHSAVEDPLP AAKAAADEVL AARMDKAVDI NAEEVNNHAA NCSAAAGPSV  300
LNNQGEASRK GTLSSLMDWN STARTFQWED SLDPEGSRSQ SHIPHLPSPR RNRVSPLQLA  360
DNKAKRRRAR KWSSVEEETL RKGVDQFGSS NWKDILIHNP DVFIGRTAVD LKDKWRNMMR  420
GILRPPTTEK AADILLEALF FACQNMADEA STSPSDQKEF SMYNQHIDSL QQLSGDYDSV  480
IICLGANASS LPELANKLPL RTCRGVVAEF QLPSDTVEKY GSQSPSILSD AWLAFQGPCT  540
VSIGSTWQWK SDNHALSVSD EEAASAMEEL LPKASAVYPG ISKWDYIRAR AGIRAMPPLT  600
ANGSLPLLGC LNDVIGMRSN CAFWLVGGLG ARGLLYHGLV GKLTAKAAIS GDENIIPSEF  660
TCWKTIKASK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G054500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564207.10.0uncharacterized protein LOC100830298 isoform X1
TrEMBLK3XVP70.0K3XVP7_SETIT; Uncharacterized protein
STRINGSi006005m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31543040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.14e-13TRF-like 5