PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G045900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 406aa    MW: 44924.5 Da    PI: 6.0816
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G045900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.99.2e-07152175123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         y+C+ Cg++F+++ +L rH r  H
  Brast07G045900.1.p 152 YSCGVCGRRFPTRPDLARHFRQlH 175
                         99*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.12E-5150178No hitNo description
Gene3DG3DSA:3.30.160.603.1E-4151178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.006152180IPR007087Zinc finger, C2H2
SMARTSM003553.4E-4152175IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280154175IPR007087Zinc finger, C2H2
CDDcd061675.71E-8181302No hitNo description
Gene3DG3DSA:3.40.50.10109.7E-5224291IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MPPPLSFLHL PPSPPALHPS PSFCRARHRP SLRTAPQPRA PAVAAAGNPS PAAPTAADVE  60
MFRGVDGVWT ARTPTVVVLW DLDNKPPRGP PFEAATSLRE AASLLGRVDS VSAFANRHAF  120
THLPAWVSAD RRDRRALDRA ERAGAVAPPV PYSCGVCGRR FPTRPDLARH FRQLHERERN  180
KKLGRLRSLK GKKRQKFRER YISGNTKYQE AARELLTPKV GYGLDSELRR AGVHVRTVPD  240
KPQAADQALK RQVKHAIACG VDWVVLVSDD SDFTDTVRNA RDAALRMVVV GDGCRSLGKV  300
ADIWLPWDSV QNGEVDEEMM RSGRVLGFRD YEDDEEDDEE FIVDWDTSQL DDVVDDIVTT  360
RTKVFGATAV SAFAEEDIVD GISGLGLKED DMFWSSDDED EDGFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G045900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3596000.0AK359600.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1099L22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024312844.10.0uncharacterized protein LOC100821186
TrEMBLA0A2K2DQ950.0A0A2K2DQ95_BRADI; Uncharacterized protein
STRINGBRADI1G48330.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98063234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.17e-91C2H2-like zinc finger protein