PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G044100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 421aa    MW: 47861.1 Da    PI: 6.088
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G044100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12.1e-18126172148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT eEd +lv++v+q+G + W+ Ia++++ gR +kqc++rw+++l
  Brast07G044100.1.p 126 KGQWTLEEDRKLVKLVEQFGLRKWSQIAQMLP-GRVGKQCRERWHNHL 172
                         799*****************************.*************97 PP
2Myb_DNA-binding50.45e-16178220145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         ++ W++eEd +l++ +k+ G++ W+ Ia++++ gRt++++k++w+
  Brast07G044100.1.p 178 KDTWSEEEDMILIQTHKEVGNK-WAEIAKRLQ-GRTENSIKNHWN 220
                         679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.214121176IPR017930Myb domain
SuperFamilySSF466892.8E-31123219IPR009057Homeodomain-like
SMARTSM007172.4E-16125174IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-29127180IPR009057Homeodomain-like
CDDcd001671.48E-15129172No hitNo description
PfamPF139211.0E-19129186No hitNo description
PROSITE profilePS5129420.361177227IPR017930Myb domain
SMARTSM007174.0E-15177225IPR001005SANT/Myb domain
CDDcd001675.81E-12180223No hitNo description
Gene3DG3DSA:1.10.10.601.1E-20181225IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MDFSCFQPHT GTFENMPLDF HVQQYGQYEL HSVDRSFEPA GGSIVPFASF YHEYYPQGAM  60
NKAVVDDASS IIHNSESHLP LLMPKIEVSH LIESGLRSYK TYEMSSRFIP RKKASSKALK  120
KTNVVKGQWT LEEDRKLVKL VEQFGLRKWS QIAQMLPGRV GKQCRERWHN HLRPNIKKDT  180
WSEEEDMILI QTHKEVGNKW AEIAKRLQGR TENSIKNHWN ATKRRQFARR RTRSSTKNPK  240
SGTLLQSYIK SLGIGCSKVI APLDPKEPPL SPSSPPPPTQ NLVHLNDNLP ESNSSNIIVT  300
QGIFSTEDIQ THSCEEILVP ICDDFSIDMC DGLFDAKEEA QYQVYNIDDD VDMDSIFNHI  360
DYAIKIDHGI DMDMTWDDNA LINIESESSS LVTPIGPAEI KTVKEEMDLV ELVAHTQTCN  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-431242272105MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-431242272105C-Myb DNA-Binding Domain
1msf_C6e-431242272105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G044100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228004.10.0transcription factor MYB41 isoform X1
TrEMBLA0A3B6A1U30.0A0A3B6A1U3_WHEAT; Uncharacterized protein
STRINGTRIUR3_12421-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.14e-63myb domain protein 98