PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast07G041000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | B3 | ||||||||
Protein Properties | Length: 704aa MW: 82242.6 Da PI: 6.445 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.9 | 5.7e-16 | 257 | 348 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ffkv p + ++ ++ +p +f + +e+++ ++l+ +sg++W+v+l ++gr l+ GWkeF ++++++ g f+vF++dg+s+f Brast07G041000.1.p 257 FFKVVFPGYCTE--QVGIPSSFSGFLE--NESPRVVSLRGPSGNTWRVEL-LADSKGRLHLAHGWKEFFNDHRIQLGYFLVFRYDGQSQF- 341 566665555554..4789999974444..457889***************.5677778999************************99999. PP .EEEEE-S CS B3 92 lvvkvfrk 99 v vf+k Brast07G041000.1.p 342 -SVLVFDK 348 .9999987 PP | |||||||
2 | B3 | 56.2 | 6.5e-18 | 592 | 687 | 3 | 98 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 k+lt s v + +v+p +f++++ k s+++tl d++ + Wev + y+ + ++ +++GW F+ n+L+ D++vF+ +++e + Brast07G041000.1.p 592 KALTYSEVYMTYFMVIPHEFVQKYFPK--HSRKMTLWDPQAKPWEVSYVYWDSCSSsgAAFSAGWGAFAAYNNLEKSDVCVFEILDDDEYN 680 7788899999999***********744..6779***************996666666899***********************88889998 PP .EEEEE- CS B3 92 lvvkvfr 98 +v+++r Brast07G041000.1.p 681 IKVHIHR 687 9999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.0E-21 | 252 | 351 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-22 | 253 | 351 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.12E-18 | 255 | 347 | No hit | No description |
Pfam | PF02362 | 4.6E-13 | 257 | 348 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-13 | 257 | 349 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.521 | 272 | 349 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.2E-22 | 584 | 687 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-20 | 588 | 689 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.07 | 590 | 689 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-12 | 590 | 689 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-15 | 592 | 687 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.20E-21 | 592 | 687 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 704 aa Download sequence Send to blast |
MVAVKKQNNT MDMVSNTKEV KVKEEERDNL VNDKVRRKEM EMKQNKEEGN KKKDKEKKRA 60 LKPKVAKYKK IKGKNRRDKE ERGDECQREK DERRKEKEHN ERVDEEKEKK DTEEEQKKMK 120 GKERKEEWPR EMEEKEQRER VDKEKAKKDK KEKQKKRKEK KLHEDRKRKG EQNEMNKERE 180 EWQRETEKIE KMEILDKEKA KKDKEEKKQK RSEKEGQEKE VQSDREMREQ MELEVEEDEQ 240 NERNGNEEPT QNAFPNFFKV VFPGYCTEQV GIPSSFSGFL ENESPRVVSL RGPSGNTWRV 300 ELLADSKGRL HLAHGWKEFF NDHRIQLGYF LVFRYDGQSQ FSVLVFDKSG CEAHDAFLAR 360 PRNAAVTNDG GGMSTNVDGM DPQEEHMEED SCFLAEDDKE DMDTNAGDTN PQEEDTGGEE 420 PECSEEEDDE WHMGSDDASD TSEKNDQDDN ANYAPDTSED DGVYHGLSTR KKRFRKIDDI 480 LSEDDRRASK KRKVVRKRSV ASPHSSASKV ATSGTIMTDT VNIVKSIAPA RPRFQCTLFN 540 KSNNVPRPGK VLTKVQRRPA SISQRRPVTE EEKSDALERA MRFRSLRPFT HKALTYSEVY 600 MTYFMVIPHE FVQKYFPKHS RKMTLWDPQA KPWEVSYVYW DSCSSSGAAF SAGWGAFAAY 660 NNLEKSDVCV FEILDDDEYN IKVHIHRVVQ EITPCMHTLI GGN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 470 | 492 | KKRFRKIDDILSEDDRRASKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast07G041000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014752141.1 | 0.0 | myb-like protein X isoform X2 | ||||
TrEMBL | I1H0U1 | 0.0 | I1H0U1_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G48690.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4461 | 37 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53310.1 | 3e-16 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast07G041000.1.p |