PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G031200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 640aa    MW: 67148.1 Da    PI: 6.6788
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G031200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS373.92.1e-1142416172374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevs 88 
                         v +L++cAe + +g++e+a+ +Larl e asp+g +p++Rlaayf+eALa r+a +++++++  pp++ ++ n   ++e + al++++ v+
  Brast07G031200.1.p 241 VCALTACAESLGAGNHEAANYYLARLGESASPSGpTPLHRLAAYFAEALAIRVATTWPHMFHVSPPRHLTDLNdgdEEEDAVALRVLNSVT 331
                         5689************************************************************9999988777888889999999***** PP

                GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                         Pi++f h+t N+ +l+ ++g+ rvH+iDfdi+qGlQWp+Llq+La+R+ e+p+++RiTgvg+    sk+el+etg rLa++A++lg+ fef
  Brast07G031200.1.p 332 PIPRFLHFTLNERLLRDFDGHGRVHVIDFDIKQGLQWPSLLQSLAARRpEPPAHVRITGVGP----SKHELQETGARLARVAASLGLAFEF 418
                         *********************************************66548888*********....9************************ PP

                GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalf 268
                         +++v+ rled++l++L+vk+gE +aVn+vl+ hrll+++   +    ++L+l +s+ + ++ + e+ea+  n++++  rf++a+++y+a f
  Brast07G031200.1.p 419 HAVVELRLEDVRLWMLHVKRGERVAVNCVLAAHRLLRDESGGA--MAAFLSLARSTGAGLLLLGEHEAEGlNGGRWEPRFARAMRHYAAAF 507
                         **9999******************************6555444..489********************999******************** PP

                GRAS 269 dsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg...yrveees 355
                         d++ +a+l ++s +rik E++ ++rei+n+va ega+r erhe +++Wr+ +e+ GF+++ +++++a+q +++ r+++ +g    rv+ ++
  Brast07G031200.1.p 508 DAVgAAGLDAASPARIKAEEM-FAREIRNAVAFEGADRCERHEGFKQWRRLMEDGGFRNAGFGDREAMQGRMIARMFAPQGnygVRVQGDD 597
                         ***99****************.*******************************************************94444235667555 PP

                GRAS 356 g.slvlgWkdrpLvsvSaWr 374
                         g  l+l W d+pL++vSaW+
  Brast07G031200.1.p 598 GeGLTLQWLDNPLYTVSAWT 617
                         50566**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.824214593IPR005202Transcription factor GRAS
PfamPF035147.3E-112241617IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MLAGCSLSSR HQMSSTAQRL PCGFSKRGGR GGHGDGGAGG GGVPRVAGDG RGGSSGACSF  60
RAHPAPPVTQ AVSWGAATAA AKPEPCVGDG GGGWERRSRA LKRAHDEAAA VEEEEYGAVA  120
RAKRTRMMGG GAGDEVWFHQ SIAGPMMQAA AGGGEEEEEE EAKVFLVPSA AAFPHGMVHA  180
AAAAGGAGTS TLAAAKQEEY SKSPSSHSSS SSGTDGGSSA AMPLATGGSS SQPEREALEL  240
VCALTACAES LGAGNHEAAN YYLARLGESA SPSGPTPLHR LAAYFAEALA IRVATTWPHM  300
FHVSPPRHLT DLNDGDEEED AVALRVLNSV TPIPRFLHFT LNERLLRDFD GHGRVHVIDF  360
DIKQGLQWPS LLQSLAARRP EPPAHVRITG VGPSKHELQE TGARLARVAA SLGLAFEFHA  420
VVELRLEDVR LWMLHVKRGE RVAVNCVLAA HRLLRDESGG AMAAFLSLAR STGAGLLLLG  480
EHEAEGLNGG RWEPRFARAM RHYAAAFDAV GAAGLDAASP ARIKAEEMFA REIRNAVAFE  540
GADRCERHEG FKQWRRLMED GGFRNAGFGD REAMQGRMIA RMFAPQGNYG VRVQGDDGEG  600
LTLQWLDNPL YTVSAWTPAG GGEGSAVSAS TAASHSLQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5324761826380Protein SCARECROW
5b3h_A2e-5324761825379Protein SCARECROW
5b3h_D2e-5324761825379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G031200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003557108.10.0protein DWARF AND LOW-TILLERING
SwissprotQ9LWU90.0DLT_ORYSJ; Protein DWARF AND LOW-TILLERING
TrEMBLI1H1540.0I1H154_BRADI; Uncharacterized protein
STRINGBRADI1G49630.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-116GRAS family protein
Publications ? help Back to Top
  1. Tong H,Chu C
    Roles of DLT in fine modulation on brassinosteroid response in rice.
    Plant Signal Behav, 2009. 4(5): p. 438-9
    [PMID:19816111]
  2. Li W, et al.
    Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice.
    Planta, 2010. 232(6): p. 1383-96
    [PMID:20830595]
  3. Tong H, et al.
    DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice.
    Plant Cell, 2012. 24(6): p. 2562-77
    [PMID:22685166]
  4. Zhang C,Bai MY,Chong K
    Brassinosteroid-mediated regulation of agronomic traits in rice.
    Plant Cell Rep., 2014. 33(5): p. 683-96
    [PMID:24667992]
  5. Yang C,Shen W,He Y,Tian Z,Li J
    OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.
    PLoS Genet., 2016. 12(6): p. e1006118
    [PMID:27332964]