PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G024200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 966aa    MW: 112553 Da    PI: 4.6013
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G024200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.51e-17334424199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffkv       ++++l +p+ f  ++ ++ e+s  ++l+d sg++W v l    +s +  + +GW++F ++++L +g f+vF+++g+s+f 
  Brast07G024200.1.p 334 FFKVV--MPGESTQQLKIPRAFK-KYLEN-ESSGVVSLRDASGNTWHVGL--VANSMELSFVNGWERFFSDHRLHDGNFLVFRYNGQSQF- 417
                         77777..44666778*******6.88444.46679***************..9********************************99999. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                           v vf++
  Brast07G024200.1.p 418 -SVLVFDR 424
                         .9999987 PP
2B3551.5e-17852942297
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         fk++ ps v ++  +v+p + + +++++k e+++++l d++g +Wev + y++  ++  +++GW  F   n+L+e D++vF++ ++ +   
  Brast07G024200.1.p 852 FKAMRPSEVYTTYFMVIPDTLV-KNSLPK-EDTQMMLWDPQGATWEVSYVYNGE-CSAAFGAGWGAFSTHNNLEESDVCVFEVLDSCN--I 937
                         6999*****************9.887876.5579***************77666.56789**********************665444..4 PP

                         EEEEE CS
                  B3  93 vvkvf 97 
                         +v+v+
  Brast07G024200.1.p 938 KVHVH 942
                         56655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.2E-24328427IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-21329427IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.156332425IPR003340B3 DNA binding domain
CDDcd100178.68E-20332423No hitNo description
PfamPF023628.9E-15334424IPR003340B3 DNA binding domain
SMARTSM010191.3E-10334425IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-20844943IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-19845943IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.4E-11851945IPR003340B3 DNA binding domain
PROSITE profilePS5086312.661851945IPR003340B3 DNA binding domain
PfamPF023622.1E-14852943IPR003340B3 DNA binding domain
CDDcd100174.21E-17852943No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 966 aa     Download sequence    Send to blast
MEGHQKQNKI VGMVSSKQQV KVKEEKIDDM ENEKEMQAKV KRNKNKEVGT NIKEKYNALR  60
ANALNYTERE EKFQREMKIK EQRGRVDTQK AKKHKEEEQR KEDKEREGSQ REMMMEKEHM  120
DIMDKEKAKK DKEEEQRKKE EKERKGCQLR EIEDRKKEKE QREMMDKEKE KKEKEQRERM  180
DMEKEKKEKE HREMMDMEKE KKEKEQREMM DMKKEKKEKE QRERMDMEKE KKKKEHKERM  240
DMEKEKKEKE QRERMDMEKE KKEKEQRERM DMEKEKKEKE HRERMDMEKD KEEENIKKRK  300
QQEKEVHEYK ERKDEQHHER NDEDETTENT SPHFFKVVMP GESTQQLKIP RAFKKYLENE  360
SSGVVSLRDA SGNTWHVGLV ANSMELSFVN GWERFFSDHR LHDGNFLVFR YNGQSQFSVL  420
VFDRSGCEVR CAFLPWSCND RVVEDDERGK GTNVDGTDPH EEDTRNMAEE KDGGDIGRNA  480
GGTDLMREDI GYTLAEGDDK VDMNTNTDVT KPQEEDAGNK AEENDGVDMD TNVGGTNLME  540
EDPRYTLVGH DDKVDMGINT YVTNPQEEDT GNMVEENVGE GMDTNARDTN LMDSRDAGYA  600
LAEDGYEGDI DTNTDVTNPQ EEDIVVAKSK ASEEEGDDWP MGRDDALDTL QEKDLDGTAN  660
YANSIPQEEA NANYAHGTPP KEEEEEEEEE EEEEEEEDND DDDDDDDVDV PVVDDVVADD  720
DSDSYDFGIG NRKKRYRKID DILAECDLLE SKKRKAMEER PATPLCSSYK VASPSSANVK  780
GDTTIRSTAP VRSRFESTLF SKSNNVPQPG KVIAKVQRMP GLTSQRRAVT KEEEEDALER  840
ARQFHSHRAF SFKAMRPSEV YTTYFMVIPD TLVKNSLPKE DTQMMLWDPQ GATWEVSYVY  900
NGECSAAFGA GWGAFSTHNN LEESDVCVFE VLDSCNIKVH VHRVVCEITP CVKRPPPLDL  960
NSPPL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1732754KKRYRKIDDILAECDLLESKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G024200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314039.10.0probable ATP-dependent helicase PF08_0048
TrEMBLA0A2K2DQQ30.0A0A2K2DQQ3_BRADI; Uncharacterized protein
STRINGBRADI1G50240.11e-169(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4989422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.12e-15B3 family protein