PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast07G008100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | B3 | ||||||||
Protein Properties | Length: 163aa MW: 17811.1 Da PI: 4.8593 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.5 | 5.8e-14 | 48 | 130 | 9 | 96 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 + ++++ +v+p +f ++ + + grsW++++ ++ + + + W +F+ +n+L++gD +vF+l++ ++e+v+ v Brast07G008100.1.p 48 SRTQLRDMVIPARFQRRLPAR--R--AAAVVRCAGRSWTMNY--CGDTKVKRFDTAWAHFAADNRLQAGDACVFELVSGaGGREMVFEV 130 55566779******9888533..3..5778899*********..666656668999*******************99776888888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-18 | 36 | 134 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.3E-16 | 38 | 132 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.616 | 40 | 136 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.17E-13 | 41 | 134 | No hit | No description |
SMART | SM01019 | 2.6E-5 | 42 | 136 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-12 | 47 | 129 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MESSASWRQL PDVLIVKPAG EIIFPASDEQ HKTTPLSGDH PFFTAILSRT QLRDMVIPAR 60 FQRRLPARRA AAVVRCAGRS WTMNYCGDTK VKRFDTAWAH FAADNRLQAG DACVFELVSG 120 AGGREMVFEV QVLRGGGLPE PEPEEDDGAA NDKPIVIGDE DD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast07G008100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024317071.1 | 4e-94 | B3 domain-containing protein Os06g0112300 | ||||
Swissprot | Q9LHY9 | 2e-35 | Y6112_ORYSJ; B3 domain-containing protein Os06g0112300 | ||||
TrEMBL | I1H1W1 | 8e-93 | I1H1W1_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G51730.1 | 1e-93 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12046 | 19 | 33 |
Link Out ? help Back to Top | |
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Phytozome | Brast07G008100.1.p |
Publications ? help Back to Top | |||
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