PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G007700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 362aa    MW: 37576.4 Da    PI: 6.3057
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G007700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.47e-181562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd+llvd++ + G g+W++ ++  g++R++k+c++rw +yl
  Brast07G007700.1.p 15 KGPWTPEEDKLLVDYISEKGHGSWRRLPKLAGLNRCGKSCRLRWTNYL 62
                        79********************************************97 PP
2Myb_DNA-binding52.41.2e-1668113148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rgr+  +E++l+++++  lG++ W++Ia +++ gRt++++k++w+++l
  Brast07G007700.1.p  68 RGRFDDDEEKLIIHLHSILGNK-WSSIATKLP-GRTDNEIKNYWNTHL 113
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.3261062IPR017930Myb domain
SuperFamilySSF466893.18E-2912109IPR009057Homeodomain-like
SMARTSM007171.9E-141464IPR001005SANT/Myb domain
PfamPF002492.0E-161562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-221669IPR009057Homeodomain-like
CDDcd001671.95E-111762No hitNo description
PROSITE profilePS5129426.3563117IPR017930Myb domain
SMARTSM007171.9E-1567115IPR001005SANT/Myb domain
PfamPF002498.3E-1568113IPR001005SANT/Myb domain
CDDcd001671.00E-1170113No hitNo description
Gene3DG3DSA:1.10.10.603.7E-2570117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGRSPCCDGE AGVKKGPWTP EEDKLLVDYI SEKGHGSWRR LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGR FDDDEEKLII HLHSILGNKW SSIATKLPGR TDNEIKNYWN THLRKKLLAM  120
GIDPVTHRPR TDLSLLAGLP ALLAAAGTFS SGSGAISSSW AENMNALRLQ ADAAKFQLLQ  180
GLVRALTTNT SAAAPMAANG GAAGSGPQDH LMALLSGGGN GGLAGGAGFV DQQMSMLQQY  240
DGLLSLPPLT SAACNNGATA AAAMPGAQLV GHGAAGMFGG GDSFGAGDGL SSTELGGSSN  300
VTAACGTAAA PPLACGEETT PASSPMFFDG LESLNLDDHL NTDGGWKDLL EQMSWLNSSE  360
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-29151177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G007700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276651e-137KJ727665.1 Zea mays clone pUT5592 MYB transcription factor (MYB148) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229990.10.0transcription factor MYB93
SwissprotQ9S9Z22e-80MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A0Q3JQH00.0A0A0Q3JQH0_BRADI; Uncharacterized protein
STRINGBRADI1G51747.11e-176(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-77myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]