PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast07G005200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | B3 | ||||||||
Protein Properties | Length: 181aa MW: 19061.7 Da PI: 10.7925 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 87.4 | 1.2e-27 | 34 | 133 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+kv tpsdv+k++rlv+pk+ ae+h g ++ l++ed +g+ W ++++y+++s++yv+tkGW+ Fv++ +L +gD+v F+ Brast07G005200.1.p 34 FDKVVTPSDVGKLNRLVVPKHLAEAHfvvpgsG--GRGAALLRFEDGKGKAWCFRFSYWGSSQSYVMTKGWSAFVRDRRLAAGDTVSFS-- 120 89***************************9653..447789************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 r +++l++ +r+ Brast07G005200.1.p 121 -RAGGRLFIDCRRR 133 .5678889988886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.9E-32 | 30 | 135 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.04E-23 | 32 | 132 | No hit | No description |
SuperFamily | SSF101936 | 6.15E-26 | 32 | 127 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.6E-24 | 34 | 133 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.015 | 34 | 134 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-16 | 34 | 134 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MVLTAAARVS GGEGGVSGGG GGNGVCGGVR EHMFDKVVTP SDVGKLNRLV VPKHLAEAHF 60 VVPGSGGRGA ALLRFEDGKG KAWCFRFSYW GSSQSYVMTK GWSAFVRDRR LAAGDTVSFS 120 RAGGRLFIDC RRRGSAAGST TAMASRRLRL FGVDVEVADE PLDRSAARLE LVNLRLGLND 180 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 8e-44 | 30 | 133 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 8e-44 | 30 | 133 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast07G005200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004698 | 4e-35 | AP004698.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0498E12. | |||
GenBank | AP014964 | 4e-35 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 4e-35 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014751764.1 | 5e-77 | B3 domain-containing protein Os06g0107800 | ||||
Swissprot | Q8LMR9 | 1e-44 | Y3209_ORYSJ; B3 domain-containing protein Os03g0120900 | ||||
TrEMBL | I1H1Z3 | 1e-75 | I1H1Z3_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G52000.1 | 2e-76 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12947 | 29 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 4e-42 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast07G005200.1.p |
Publications ? help Back to Top | |||
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