PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G003000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 531aa    MW: 55461.8 Da    PI: 5.707
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G003000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS220.77.2e-681585292374
                GRAS   2 velLlecAeavssgdlelaqalLarlsel......aspdgd....pmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 
                         v+ Lle+A+  ++gd + a+++Larl+++      +s++ +    p+ R+aa +  AL  rl+  +s    +++p++ s+ +++ +laa+k
  Brast07G003000.1.p 158 VDELLEAARLADAGDSTGAREILARLNHHgllllpSSSSSSspppPLLRAAALLRDALLLRLLPPSS---GSVRPQPPSPLDVALKLAAHK 245
                         678*************************8888886333332466699****************9444...456666666777********* PP

                GRAS  83 lfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLa..sRp....egppslRiTgvgspesgskeeleetgerLa 166
                         +  ++sP ++f+ +t  qa l+a+++    vH +Dfd++ G++Wp+L+q+La  sR+    ++pp l++T+++s +sgs  el+  +e L+
  Brast07G003000.1.p 246 AMADASPAVQFASFTSTQAFLDAAATTaGGVHLVDFDLGFGAHWPPLMQELAhsSRRaapsAPPPALKLTALVS-ASGSPMELRLAQESLT 335
                         **********************9998879***********************7656578877899*********.778************* PP

                GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                         +fA+ lg+pf+f +l+ +  + +   +L+++ +E++aV++ +  ++       + s  ++ L+l+k+l+P +vv+v++   + + ++  + 
  Brast07G003000.1.p 336 RFAADLGIPFDFAALAFDPSSPM--PALSLSAHETVAVHVTVGGETSA-----VVS--PAKLRLIKQLRPAIVVCVDHGGGR-DVPLQSHA 416
                         **************966655554..8999***********99666665.....555..668******************999.99****** PP

                GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sd 347
                         l+ l+  +al++sl+a+ ++  +  +kvE+++l+++i+  +  +  +     +    Wr+ + +aGF p++ls+ a++qa++llr+++ s+
  Brast07G003000.1.p 417 LNVLRSSAALLESLDAS-GASPDVVTKVEQFVLRPRIERGLVPAAGD-----KLPPAWRSVFASAGFAPLQLSNAAEAQADCLLRRTAtSH 501
                         **************999.6677999************9877666666.....5889*********************************** PP

                GRAS 348 gyrveees.gslvlgWkdrpLvsvSaWr 374
                         g++ e+++ g+l l+W++ +LvsvSaWr
  Brast07G003000.1.p 502 GFHAEKRQpGELALCWRRSELVSVSAWR 529
                         *****88527788**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.304131507IPR005202Transcription factor GRAS
PfamPF035142.5E-65158529IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MSSSSRGLND DLHPGAAATK RLRGSPPEPE PTSVLYNRSP SPPTSSSHSS AAPEPPPPIS  60
AEDWDAVFLS AGPAMAAAAP QHSQAQEDSS FLRWIMDADA DADALGFKSP AFFDPSFLNP  120
PPPPPQEEEE LFALPQQLPL PVPAGAGREE IPEPQGAVDE LLEAARLADA GDSTGAREIL  180
ARLNHHGLLL LPSSSSSSSP PPPLLRAAAL LRDALLLRLL PPSSGSVRPQ PPSPLDVALK  240
LAAHKAMADA SPAVQFASFT STQAFLDAAA TTAGGVHLVD FDLGFGAHWP PLMQELAHSS  300
RRAAPSAPPP ALKLTALVSA SGSPMELRLA QESLTRFAAD LGIPFDFAAL AFDPSSPMPA  360
LSLSAHETVA VHVTVGGETS AVVSPAKLRL IKQLRPAIVV CVDHGGGRDV PLQSHALNVL  420
RSSAALLESL DASGASPDVV TKVEQFVLRP RIERGLVPAA GDKLPPAWRS VFASAGFAPL  480
QLSNAAEAQA DCLLRRTATS HGFHAEKRQP GELALCWRRS ELVSVSAWRC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-2424352979375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G003000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228145.10.0scarecrow-like protein 22
TrEMBLI1H2230.0I1H223_BRADI; Uncharacterized protein
STRINGBRADI1G52240.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145372224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.12e-49GRAS family protein