PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G001900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CO-like
Protein Properties Length: 388aa    MW: 40541.1 Da    PI: 6.6715
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G001900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.51.7e-05952340
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                        +++C ++  +++  fC  +   lC +C  + H        H++ 
  Brast07G001900.1.p  9 PPCCHNCAAERAVVFCAADAARLCLECDGAVHAAsalaanHSRA 52
                        589*************************9999656777777765 PP
2CCT57.35.7e-20329372144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         R++a+lRY+eK+k+RkF K+i Y+sRKa+A++R+RvKGrF+k++
  Brast07G001900.1.p 329 RDRAKLRYNEKKKNRKFCKQIMYASRKARADTRKRVKGRFAKAS 372
                         8999*************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.8E-7754IPR000315B-box-type zinc finger
PROSITE profilePS5011910.4661254IPR000315B-box-type zinc finger
PfamPF062032.0E-14329371IPR010402CCT domain
PROSITE profilePS5101713.791329371IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDDLASYAPP CCHNCAAERA VVFCAADAAR LCLECDGAVH AASALAANHS RAPLCDSCFA  60
APAAIRCALV SPAACRFTYC AYCADTCAPP EGWTASSPAK HYTGCPNPAD VLRLLSVDAP  120
PAQEDFDAWL ADKLPQILQD VVQDGSQICE GGSTAPSTTA TVTGSERSSG GGGGVNGSSL  180
VGPNSDHDWN ITTNTATTGN TVDHHAGGGA DHNNPLPFEP TPSSSVCHIF SSSYCSSSSS  240
SCLQQQQQQP TMASATSLLH SLDPQLQLFG SGAAAAAGCF VLPPDVAAAN LLTISPPRPP  300
PPDQINGGEG SSAAQQQDPT AMTKKREERD RAKLRYNEKK KNRKFCKQIM YASRKARADT  360
RKRVKGRFAK ASNEHQHILH SADSDTP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G001900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228152.10.0zinc finger protein CONSTANS-LIKE 9 isoform X1
TrEMBLI1H2410.0I1H241_BRADI; Uncharacterized protein
STRINGBRADI1G52360.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1410966
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.14e-15B-box type zinc finger protein with CCT domain