PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast06G233800.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

HB-other

Protein Properties

Length: 291aa MW: 32871.3 Da PI: 4.6898

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast06G233800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	25.5	2.2e-08	222	269	6	53
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +++k qle+Le+++ +++ p+ +++ + + ++L+ + + WF rR Brast06G233800.1.p 222 RLKKVQLETLERVYLRSKRPTNTMISSIVQVTSLPRKTIVEWFEDRRE 269 67899*****************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.491	214	274	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-9	217	272	IPR009057	Homeodomain-like
CDD	cd00086	8.00E-7	217	268	No hit	No description
SMART	SM00389	7.1E-4	220	278	IPR001356	Homeobox domain
Pfam	PF00046	6.8E-6	222	269	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.7E-8	222	269	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MPKKIGSEHT GQTKECYIME TQKGEEEFKD NRSRPLAPRF ISLDARQFVT EAKIKLGRDL 60 FVGPLPLQLE DDLKNKDGLS VEDDDDDDDE ISEEDMARFE QALAEAIGDI DVGNGEESDA 120 ELKNWQLRRL ACALKIGRRK TSIKNLAGEL GLDRGLVIEL LRNPPPKLLL MSDSLPDEAP 180 SKPQAKEIEP SPVVDEVDVT ETKPQMDIPI HVMSAEWSTQ KRLKKVQLET LERVYLRSKR 240 PTNTMISSIV QVTSLPRKTI VEWFEDRREQ DGVPDHRAAY KRPLSETIAS *

Functional Description ? help Back to Top
Source	Description
UniProt	May modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250\|UniProtKB:Q70Z19, ECO:0000269\|PubMed:15923348, ECO:0000269\|PubMed:19175769, ECO:0000269\|PubMed:20836879, ECO:0000269\|PubMed:21564353}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast06G233800.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269\|PubMed:15923348, ECO:0000269\|PubMed:19175769}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP100138	1e-170	FP100138.1 Phyllostachys edulis cDNA clone: bphyst013o11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014751799.1	1e-129	protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
Swissprot	Q8H0V5	4e-61	OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBL	I1GXK6	1e-126	I1GXK6_BRADI; Uncharacterized protein
STRING	BRADI1G58817.1	1e-128	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10700	35	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11270.1	2e-63	overexpressor of cationic peroxidase 3

Link Out ? help Back to Top
Phytozome	Brast06G233800.1.p

Publications ? help Back to Top
García-Andrade J,Ramírez V,López A,Vera P Mediated plastid RNA editing in plant immunity. PLoS Pathog., 2013. 9(10): p. e1003713 [PMID:24204264] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gamir J,Pastor V,Kaever A,Cerezo M,Flors V Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina. Plant J., 2014. 78(2): p. 227-40 [PMID:24506441]