PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G226700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 382aa    MW: 40249 Da    PI: 4.8423
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G226700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.97.4e-18192238455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn+ ErrRRdriN+++  L+el+P++      K +Ka+iL +A+eY+ksLq
  Brast06G226700.1.p 192 VHNQSERRRRDRINEKMKALQELVPHC-----NKSDKASILDEAIEYLKSLQ 238
                         6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.77E-21186252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.425188237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.77E-17191242No hitNo description
PfamPF000103.0E-15192238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-21192247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-18194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDMDGGARPA PSRSRKTRLP MEAGGGGGGE LMELMWQDGA VVAQAQRRCS QSGAGASGVT  60
GEGDAWLAPD GGGGAGRDLY SQLWRSIAEA DGAGAFVAGG SSRAGEAAAG SSFCGSNAVA  120
PPPPPLLPSP EVEEEEEPGA SSADGGPSLL LKRGRDELED SRGEDADDCE AFDETRTSRR  180
PAAKRRARAA EVHNQSERRR RDRINEKMKA LQELVPHCNK SDKASILDEA IEYLKSLQLQ  240
VQIMWMTTGM APMMFPGGHQ LMPPMAMGLN PACMPAAQSL SQLQRVAPFM NNPLPNQMPQ  300
VQPPSTDCPN VSNQMPNNGV CEPTNPFLRP NDTLAAATQV PGRFSYGSQR AQQNEIHELM  360
ASTAIPASGV CPPSSADRTG T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183200KRRARAAEVHNQSERRRR
2196201ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G226700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN4002763e-93JN400276.1 Oryza sativa Japonica Group rice phytochrome-interacting factor 4 (PIF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228425.10.0transcription factor PIF4 isoform X1
SwissprotQ10CH56e-98PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13
TrEMBLA0A0Q3HE180.0A0A0Q3HE18_BRADI; Uncharacterized protein
STRINGBRADI1G58230.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31743482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-29phytochrome interacting factor 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  3. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]
  4. Todaka D, et al.
    Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress.
    Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52
    [PMID:22984180]