PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G225200.5.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 820aa    MW: 90699.9 Da    PI: 10.204
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G225200.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.7e-07149240146
                         TSSS-HHHHHHHHHHHHHTTTT..............................................-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..............................................tWktIartmgkgRtlkqcksrwq 45 
                         +++W+  E + l+++vkq   +                                              +W++Ia++   gR++ +c srw+
  Brast06G225200.5.p 149 KQSWSDMEKDSLAKGVKQQYQEiliknsmkngsstgdfsaldiacamtntagnfevppeilrsvlplvNWDKIAAMYLPGRSGAECESRWL 239
                         689***************9999****************************************************99888***********9 PP

                         H CS
     Myb_DNA-binding  46 k 46 
                         +
  Brast06G225200.5.p 240 N 240
                         8 PP
2Myb_DNA-binding24.85.1e-08249293246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         ++WT+ E++ l+  v++ G+++W  Ia  +g+ Rt+ qc  r+q 
  Brast06G225200.5.p 249 NAWTASEEKTLILTVQEKGMHNWINIAVALGTQRTPFQCLARYQR 293
                         58*****************************99**********96 PP
3Myb_DNA-binding43.66.7e-14302346248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           WT+eEd++l+ av+ +G + W ++++ +  gR ++qc +rw+k l
  Brast06G225200.5.p 302 RVWTKEEDLQLLAAVETFGCN-WQLVSASLD-GRIGNQCSNRWRKTL 346
                         57*****************88.*********.************975 PP
4Myb_DNA-binding431.1e-13354399248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         grW+++Ed++l   vk++G+g+W +I++ ++ gRt  qc +rw+++l
  Brast06G225200.5.p 354 GRWSEDEDKRLMVSVKLFGSGSWIKISQFVP-GRTQSQCSERWRNVL 399
                         8******************************.************986 PP
5Myb_DNA-binding32.61.9e-10406449246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g W +eEd +l+  v++ G   W++Ia  m  +Rt+++c  rw  
  Brast06G225200.5.p 406 GDWRPEEDSKLLASVHEVGAC-WSKIAGAMIPRRTDNMCLRRWKR 449
                         78*****************99.*****99999***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.144144242IPR017877Myb-like domain
SMARTSM007170.0013148244IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-6149181IPR009057Homeodomain-like
CDDcd001670.00216217241No hitNo description
SuperFamilySSF466891.4E-5217260IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-6217257IPR009057Homeodomain-like
PROSITE profilePS500908.56243295IPR017877Myb-like domain
SMARTSM007175.9E-5247297IPR001005SANT/Myb domain
SuperFamilySSF466898.3E-21247342IPR009057Homeodomain-like
PfamPF139214.5E-7251299No hitNo description
Gene3DG3DSA:1.10.10.606.4E-13258302IPR009057Homeodomain-like
PROSITE profilePS5129419.983296350IPR017930Myb domain
SMARTSM007173.2E-12300348IPR001005SANT/Myb domain
PfamPF002492.2E-12302345IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-15303346IPR009057Homeodomain-like
CDDcd001671.23E-9304346No hitNo description
PROSITE profilePS5009010.731348399IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.8E-18350401IPR009057Homeodomain-like
SMARTSM007171.1E-10352401IPR001005SANT/Myb domain
SuperFamilySSF466893.88E-24352447IPR009057Homeodomain-like
PfamPF002494.6E-13354399IPR001005SANT/Myb domain
CDDcd001672.70E-10355399No hitNo description
PROSITE profilePS5129416.642400455IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-15402453IPR009057Homeodomain-like
SMARTSM007171.1E-8404453IPR001005SANT/Myb domain
PfamPF002496.5E-9406449IPR001005SANT/Myb domain
CDDcd001673.27E-8408450No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 820 aa     Download sequence    Send to blast
MKNETSKVGG DEFIAHQPAE EDVEKQNPKA LNRTQFPKAA LLLVDALKKN RACQKLIRRK  60
MINIEAKIEV NKDLRDRVKC LMDYQLGCRR SFGRFLCQKV DPRVRLISSR KPSAQSEKKM  120
SALLHGPAEN LHVSKYKAVL KQFPVSLQKQ SWSDMEKDSL AKGVKQQYQE ILIKNSMKNG  180
SSTGDFSALD IACAMTNTAG NFEVPPEILR SVLPLVNWDK IAAMYLPGRS GAECESRWLN  240
VDDPLINNNA WTASEEKTLI LTVQEKGMHN WINIAVALGT QRTPFQCLAR YQRSLNPHIL  300
KRVWTKEEDL QLLAAVETFG CNWQLVSASL DGRIGNQCSN RWRKTLLPER TRVGRWSEDE  360
DKRLMVSVKL FGSGSWIKIS QFVPGRTQSQ CSERWRNVLD PDIDHGDWRP EEDSKLLASV  420
HEVGACWSKI AGAMIPRRTD NMCLRRWKRL CQDEVPRVIA TNQVKKSIFQ TNFVDRETER  480
PAIGPSDFPL LVYSKVDRGD GNTASDQVKK RSRGTCKNNL PASDPSKSSA DVAAVNTTTR  540
KSRKKLSGSG SEMQTGEDIA VSNGVNKSSS GHSRARKRKS NNGNTAVVQK RMRGSISFDN  600
VASLDILGGP SGIDNEAPRS VGKEGTSEKR TNGFMSAGNE GTLKKKMRGS ISVGDERAAK  660
NKARGSVPIG NEGNTMKRKR VTRKSAKDNS AADMVDACEL DLPALLSEAS VERDVDTGNV  720
NKMKRKSTPR PRRINIAEGT ADEYSRLADC LSFARRNGTS RNKSCSMGSL NNAMQSNGPS  780
GENLQGSTVT ISAGPDPIPV ENGSNAKLAA NDYETIIEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-242204723155MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-242204723155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G225200.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752712.10.0uncharacterized protein LOC100828457 isoform X3
TrEMBLI1H3Y10.0I1H3Y1_BRADI; Uncharacterized protein
STRINGBRADI1G58087.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.21e-141myb domain protein 4r1