PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast06G225200.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 784aa MW: 87265.3 Da PI: 10.4267 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.1 | 3.5e-07 | 149 | 240 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT..............................................-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..............................................tWktIartmgkgRtlkqcksrwq 45 +++W+ E + l+++vkq + +W++Ia++ gR++ +c srw+ Brast06G225200.4.p 149 KQSWSDMEKDSLAKGVKQQYQEiliknsmkngsstgdfsaldiacamtntagnfevppeilrsvlplvNWDKIAAMYLPGRSGAECESRWL 239 689***************9999****************************************************99888***********9 PP H CS Myb_DNA-binding 46 k 46 + Brast06G225200.4.p 240 N 240 8 PP | |||||||
2 | Myb_DNA-binding | 24.9 | 4.8e-08 | 249 | 293 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT+ E++ l+ v++ G+++W Ia +g+ Rt+ qc r+q Brast06G225200.4.p 249 NAWTASEEKTLILTVQEKGMHNWINIAVALGTQRTPFQCLARYQR 293 58*****************************99**********96 PP | |||||||
3 | Myb_DNA-binding | 43.7 | 6.3e-14 | 302 | 346 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEd++l+ av+ +G + W ++++ + gR ++qc +rw+k l Brast06G225200.4.p 302 RVWTKEEDLQLLAAVETFGCN-WQLVSASLD-GRIGNQCSNRWRKTL 346 57*****************88.*********.************975 PP | |||||||
4 | Myb_DNA-binding | 43 | 1e-13 | 354 | 399 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 grW+++Ed++l vk++G+g+W +I++ ++ gRt qc +rw+++l Brast06G225200.4.p 354 GRWSEDEDKRLMVSVKLFGSGSWIKISQFVP-GRTQSQCSERWRNVL 399 8******************************.************986 PP | |||||||
5 | Myb_DNA-binding | 32.6 | 1.8e-10 | 406 | 449 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g W +eEd +l+ v++ G W++Ia m +Rt+++c rw Brast06G225200.4.p 406 GDWRPEEDSKLLASVHEVGAC-WSKIAGAMIPRRTDNMCLRRWKR 449 78*****************99.*****99999***********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.144 | 144 | 242 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0013 | 148 | 244 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-6 | 149 | 181 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00256 | 217 | 241 | No hit | No description |
SuperFamily | SSF46689 | 1.33E-5 | 217 | 260 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.6E-6 | 217 | 257 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.56 | 243 | 295 | IPR017877 | Myb-like domain |
SMART | SM00717 | 5.9E-5 | 247 | 297 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.61E-21 | 247 | 342 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 4.2E-7 | 251 | 299 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-13 | 258 | 302 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.983 | 296 | 350 | IPR017930 | Myb domain |
SMART | SM00717 | 3.2E-12 | 300 | 348 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-12 | 302 | 345 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-15 | 303 | 346 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.75E-9 | 304 | 346 | No hit | No description |
PROSITE profile | PS50090 | 10.731 | 348 | 399 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.1E-10 | 352 | 401 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.49E-24 | 352 | 447 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.8E-20 | 354 | 406 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.4E-13 | 354 | 399 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.61E-10 | 355 | 399 | No hit | No description |
PROSITE profile | PS51294 | 16.642 | 400 | 455 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-8 | 404 | 453 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-9 | 406 | 449 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-15 | 407 | 453 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.69E-8 | 408 | 450 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 784 aa Download sequence Send to blast |
MKNETSKVGG DEFIAHQPAE EDVEKQNPKA LNRTQFPKAA LLLVDALKKN RACQKLIRRK 60 MINIEAKIEV NKDLRDRVKC LMDYQLGCRR SFGRFLCQKV DPRVRLISSR KPSAQSEKKM 120 SALLHGPAEN LHVSKYKAVL KQFPVSLQKQ SWSDMEKDSL AKGVKQQYQE ILIKNSMKNG 180 SSTGDFSALD IACAMTNTAG NFEVPPEILR SVLPLVNWDK IAAMYLPGRS GAECESRWLN 240 VDDPLINNNA WTASEEKTLI LTVQEKGMHN WINIAVALGT QRTPFQCLAR YQRSLNPHIL 300 KRVWTKEEDL QLLAAVETFG CNWQLVSASL DGRIGNQCSN RWRKTLLPER TRVGRWSEDE 360 DKRLMVSVKL FGSGSWIKIS QFVPGRTQSQ CSERWRNVLD PDIDHGDWRP EEDSKLLASV 420 HEVGACWSKI AGAMIPRRTD NMCLRRWKRL CQDEVPRVIA TNQVKKSIFQ TNFVDRETER 480 PAIGPSDFPL LVYSKVDRGD GNTASDQVKK RSRGTCKNNL PASDPSKSSA DVAAVNTTTR 540 KSRKKLSGSG SEMQTGEDIA VSNGVNKSSS GHSRARKRKS NNGNTAVVQK RMRGSISFDN 600 VASLDILGGP SGIDNEAPRS VGKEGTSEKR TNGFMSAGNE GTLKKKMRGS ISVGDERAAK 660 NKARGSVPIG NEGNTMKRKR VTRKSAKDNS AADMVDACEL DLPALLSEAS VERDVDTGNV 720 NKMKRKSTPR PRRINIAEGT ADEYSRLADC LSFARRNGTS RNKRKQSLKS DFFPINIGGC 780 SYS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-24 | 220 | 472 | 3 | 155 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-24 | 220 | 472 | 3 | 155 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast06G225200.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014752711.1 | 0.0 | uncharacterized protein LOC100828457 isoform X2 | ||||
TrEMBL | I1H3Y1 | 0.0 | I1H3Y1_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G58087.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.2 | 1e-141 | myb domain protein 4r1 |
Link Out ? help Back to Top | |
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Phytozome | Brast06G225200.4.p |