PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast06G225200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 969aa MW: 106694 Da PI: 8.2247 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.7 | 4.7e-07 | 298 | 389 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT..............................................-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..............................................tWktIartmgkgRtlkqcksrwq 45 +++W+ E + l+++vkq + +W++Ia++ gR++ +c srw+ Brast06G225200.1.p 298 KQSWSDMEKDSLAKGVKQQYQEiliknsmkngsstgdfsaldiacamtntagnfevppeilrsvlplvNWDKIAAMYLPGRSGAECESRWL 388 689***************9999****************************************************99888***********9 PP H CS Myb_DNA-binding 46 k 46 + Brast06G225200.1.p 389 N 389 8 PP | |||||||
2 | Myb_DNA-binding | 24.5 | 6.2e-08 | 398 | 442 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT+ E++ l+ v++ G+++W Ia +g+ Rt+ qc r+q Brast06G225200.1.p 398 NAWTASEEKTLILTVQEKGMHNWINIAVALGTQRTPFQCLARYQR 442 58*****************************99**********96 PP | |||||||
3 | Myb_DNA-binding | 43.3 | 8.2e-14 | 451 | 495 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEd++l+ av+ +G + W ++++ + gR ++qc +rw+k l Brast06G225200.1.p 451 RVWTKEEDLQLLAAVETFGCN-WQLVSASLD-GRIGNQCSNRWRKTL 495 57*****************88.*********.************975 PP | |||||||
4 | Myb_DNA-binding | 42.7 | 1.3e-13 | 503 | 548 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 grW+++Ed++l vk++G+g+W +I++ ++ gRt qc +rw+++l Brast06G225200.1.p 503 GRWSEDEDKRLMVSVKLFGSGSWIKISQFVP-GRTQSQCSERWRNVL 548 8******************************.************986 PP | |||||||
5 | Myb_DNA-binding | 32.3 | 2.3e-10 | 555 | 598 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g W +eEd +l+ v++ G W++Ia m +Rt+++c rw Brast06G225200.1.p 555 GDWRPEEDSKLLASVHEVGAC-WSKIAGAMIPRRTDNMCLRRWKR 598 78*****************99.*****99999***********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.144 | 293 | 391 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0013 | 297 | 393 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-10 | 300 | 316 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-10 | 363 | 404 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00221 | 366 | 390 | No hit | No description |
SuperFamily | SSF46689 | 1.72E-5 | 366 | 409 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.56 | 392 | 444 | IPR017877 | Myb-like domain |
SMART | SM00717 | 5.9E-5 | 396 | 446 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.04E-20 | 396 | 491 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 5.5E-7 | 400 | 448 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-13 | 405 | 451 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.983 | 445 | 499 | IPR017930 | Myb domain |
SMART | SM00717 | 3.2E-12 | 449 | 497 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-12 | 451 | 494 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-15 | 452 | 495 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.24E-9 | 453 | 495 | No hit | No description |
PROSITE profile | PS50090 | 10.731 | 497 | 548 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-18 | 499 | 550 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-10 | 501 | 550 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.58E-24 | 501 | 596 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.7E-13 | 503 | 548 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.72E-10 | 504 | 548 | No hit | No description |
PROSITE profile | PS51294 | 16.642 | 549 | 604 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-15 | 551 | 602 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-8 | 553 | 602 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.9E-9 | 555 | 598 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.30E-8 | 557 | 599 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 969 aa Download sequence Send to blast |
MDLYSDDDSD PEFDEGLQED LDLVRRSCIA AGADPDAAAG RVSSYLATPS APSSAAALPA 60 AAGDGLSDDD EDEDEDEDED LALVRSIREH LHLNKASPSS PLPSEPRPIC VWPPSDTDDD 120 DEDDLETLRA IQRRFSHYQA GTSTGPPENM KNETSKVGGD EFIAHQPAEE DVEKQNPKAL 180 NRTQFPKAAL LLVDALKKNR ACQKLIRRKM INIEAKIEVN KDLRDRVKCL MDYQLGCRRS 240 FGRFLCQKVD PRVRLISSRK PSAQSEKKMS ALLHGPAENL HVSKYKAVLK QFPVSLQKQS 300 WSDMEKDSLA KGVKQQYQEI LIKNSMKNGS STGDFSALDI ACAMTNTAGN FEVPPEILRS 360 VLPLVNWDKI AAMYLPGRSG AECESRWLNV DDPLINNNAW TASEEKTLIL TVQEKGMHNW 420 INIAVALGTQ RTPFQCLARY QRSLNPHILK RVWTKEEDLQ LLAAVETFGC NWQLVSASLD 480 GRIGNQCSNR WRKTLLPERT RVGRWSEDED KRLMVSVKLF GSGSWIKISQ FVPGRTQSQC 540 SERWRNVLDP DIDHGDWRPE EDSKLLASVH EVGACWSKIA GAMIPRRTDN MCLRRWKRLC 600 QDEVPRVIAT NQVKKSIFQT NFVDRETERP AIGPSDFPLL VYSKVDRGDG NTASDQVKKR 660 SRGTCKNNLP ASDPSKSSAD VAAVNTTTRK SRKKLSGSGS EMQTGEDIAV SNGVNKSSSG 720 HSRARKRKSN NGNTAVVQKR MRGSISFDNV ASLDILGGPS GIDNEAPRSV GKEGTSEKRT 780 NGFMSAGNEG TLKKKMRGSI SVGDERAAKN KARGSVPIGN EGNTMKRKRV TRKSAKDNSA 840 ADMVDACELD LPALLSEASV ERDVDTGNVN KMKRKSTPRP RRINIAEGTA DEYSRLADCL 900 SFARRNGTSR NKSCSMGSLN NAMQSNGPSG ENLQGSTVTI SAGPDPIPVE NGSNAKLAAN 960 DYETIIEE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 8e-25 | 369 | 621 | 3 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 8e-25 | 369 | 621 | 3 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast06G225200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014752712.1 | 0.0 | uncharacterized protein LOC100828457 isoform X3 | ||||
TrEMBL | I1H3Y1 | 0.0 | I1H3Y1_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G58087.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6594 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.1 | 1e-139 | myb domain protein 4r1 |
Link Out ? help Back to Top | |
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Phytozome | Brast06G225200.1.p |