PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G196800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 453aa    MW: 49725.9 Da    PI: 4.6456
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G196800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.43e-35501402101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d++ ++++sws ++nsfvv+d++ fa+ +Lp++Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++
  Brast06G196800.1.p  50 FLTKTYDMVDDQNSDHVVSWSPTNNSFVVWDPHAFATLLLPRHFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRH 131
                         9********************999*****************************************999.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                         ll++i+r+k
  Brast06G196800.1.p 132 LLKNIRRRK 140
                         *******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.8E-6246139IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.3E-3946139IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.45E-3646139IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.8E-3250139IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-185073IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-1888100IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434089113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-18101113IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MDPLLSLVKE EQEGHGGGGS PAVAAEGGSA TAAAVPRPME GLHDAGPPPF LTKTYDMVDD  60
QNSDHVVSWS PTNNSFVVWD PHAFATLLLP RHFKHSNFSS FVRQLNTYGF RKVDPDRWEF  120
ANEGFLRGQR HLLKNIRRRK PPAHPASNQQ SLGSSYLEVG HFGNDAEIDR LKRDKELLMA  180
QVVKLRQEQQ DTKARLKAME DRLHGNEQKQ QQMVTFLARV LRNPEFLKQL IAKNEMRKQL  240
HDTISKKRRR RIDQGTEADR MGASSSLQQE SPILFDPHMS MELLADGSVQ LLADGIPPDL  300
EGSVGLVADG IPPDMESSVE HVADGIPPGL EGSVGLLADG IPPDLEGSLE LLADGIPLNL  360
EGSMDLLADG IPSDLDGPGI KTNGVMEPHG FDLGTCGMQQ NRAQGVFKDN FWDDLLNEEL  420
GDEDDNPVIM EDMDVLSEKM GYLVSDAPTP TK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-254513921129Heat shock factor protein 1
5d5v_B3e-254513921129Heat shock factor protein 1
5d5v_D3e-254513921129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245250KKRRRR
2246251KRRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G196800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228292.10.0heat stress transcription factor A-2b
RefseqXP_010228293.10.0heat stress transcription factor A-2b
RefseqXP_024313196.10.0heat stress transcription factor A-2b
SwissprotQ6VBB21e-156HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLI1H3550.0I1H355_BRADI; Uncharacterized protein
STRINGBRADI1G55630.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.12e-99heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]