PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G178200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 567aa    MW: 62122.6 Da    PI: 5.7541
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G178200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.2e-14382428455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h   Er+RR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Brast06G178200.1.p 382 NHVLQERKRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 428
                         7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.9E-3516118IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.098378427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-18379447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-17382443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.96E-14382432No hitNo description
PfamPF000102.7E-11382427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-16384433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00106495559No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MMKSCRADAV QESASRRPTA ALAPEDLTET EWFYLMCASY SFPPHVGLPG RAFAKGGHVW  60
LCRANEVDSK VFSRAILAKS AGIQTVVCIP VVDGVLEIGT IENVKEDISL VQCAMSIFMD  120
QQDIQMIPTI SEHSTSDKIC HMYQQSFQTQ RKIHAGQEDE MEHDDDDIGA ECASGSGNTA  180
GRNYSQDTPL NIVGNTDDQA TPNAGSSELM QLEMPERVRD GCSSNLDDEI QMLMVCQNSD  240
VDQSDFQRQD EPSQSWHFLY EELCSGYPQS SGENQDIVLQ LENAHYAETV MSILQSNTRR  300
QAAGPSTRSY VAASHQSSFS TWHPTMLQQG RTATGAGGTT PQRMLRSVLF NNAAASGHGK  360
PPEDIPRGGD GGPRREADFS ANHVLQERKR REKLNERFII LRSLVPFVTK MDKASILGDT  420
IEYVKQLRSR IQDLESSSTR QQQQVVHGCG GLTAAADQAR SAKRKLATRE GSSASSSSAP  480
PSAEVQVSII ESDALLELRC PDRRGLLLRI MLALQDQLRL DLTAVRASSD GGVLLAELRA  540
KVREVHGRRS SISEVKRAIH LIISSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14382445871Transcription factor MYC2
5gnj_B2e-14382445871Transcription factor MYC2
5gnj_E2e-14382445871Transcription factor MYC2
5gnj_F2e-14382445871Transcription factor MYC2
5gnj_G2e-14382445871Transcription factor MYC2
5gnj_I2e-14382445871Transcription factor MYC2
5gnj_M2e-14382445871Transcription factor MYC2
5gnj_N2e-14382445871Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1386391ERKRRE
2387392RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G178200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230011.10.0basic helix-loop-helix protein A isoform X2
TrEMBLA0A2K2DRD10.0A0A2K2DRD1_BRADI; Uncharacterized protein
STRINGBRADI1G54070.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88633036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-47bHLH family protein