PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G123900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CAMTA
Protein Properties Length: 909aa    MW: 102600 Da    PI: 9.1789
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G123900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11635.5e-51341465117
                CG-1   5 kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                          +rw +++ei+a+L+n++++++++++ + p sg+++Ly+rk+vr+frkDG++wkkkkdgktv+E+hekLK+g+ e +++yYa++e+np+f 
  Brast06G123900.1.p  34 PARWFRPNEIYAVLANHARFKVHAQPIDMPVSGTIVLYDRKVVRNFRKDGHNWKKKKDGKTVQEAHEKLKIGNEERVHVYYARGEDNPNFF 124
                         68***************************************************************************************** PP

                CG-1  96 rrcywlLeeelekivlvhylev 117
                         rrcywlL++e e+ivlvhy+++
  Brast06G123900.1.p 125 RRCYWLLDKEAERIVLVHYRQT 146
                         *******************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143772.69226152IPR005559CG-1 DNA-binding domain
SMARTSM010761.4E-6029147IPR005559CG-1 DNA-binding domain
PfamPF038593.8E-4433145IPR005559CG-1 DNA-binding domain
SuperFamilySSF812962.38E-10358445IPR014756Immunoglobulin E-set
CDDcd002041.20E-16541651No hitNo description
SuperFamilySSF484031.71E-18550657IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.1E-18553656IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029720.633559663IPR020683Ankyrin repeat-containing domain
PfamPF127967.7E-8565655IPR020683Ankyrin repeat-containing domain
SMARTSM002486.4E-6592621IPR002110Ankyrin repeat
PROSITE profilePS5008811.781592624IPR002110Ankyrin repeat
SMARTSM00248230631660IPR002110Ankyrin repeat
SuperFamilySSF525401.78E-8743808IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000153757779IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.455759784IPR000048IQ motif, EF-hand binding site
PfamPF006120.0065760778IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0095780802IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.493781805IPR000048IQ motif, EF-hand binding site
PfamPF006120.005782802IPR000048IQ motif, EF-hand binding site
SMARTSM000150.41861883IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.608863891IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    Send to blast
MAGAAGRDPL LRSEIHGFIT YADLNFEKLK AEAPARWFRP NEIYAVLANH ARFKVHAQPI  60
DMPVSGTIVL YDRKVVRNFR KDGHNWKKKK DGKTVQEAHE KLKIGNEERV HVYYARGEDN  120
PNFFRRCYWL LDKEAERIVL VHYRQTSEEN AIAHPSTEEA AEVPTMNRSQ YYTSPPTSAD  180
SASVHTELSF SPPVPEEINS HGGSAISNGT DGSTLEEFWV HLLESSMKND TSSSGGSMAF  240
SQQIKYTPKD SENNSNTTNN AMLVSPPNVM PEAYPTNHVP ANHVGDLKHQ EDQLQYLLTP  300
DVDSQSERFV NSLQRTPVDS NIPNDVPARE NSLGLWKYLN DDSPCLGDNI VSNERLFNIT  360
DFSPEWALST EHTKILVVGY YYEQHKHLAG SSMYGIFGDN CVAADMIQTG VYRFMAGPHT  420
PGRVDFYLTL DGKTPISEVL SFEYRSMPGD SLKSDLKPLE DENKKSKLQM QMRLARLMFA  480
TNKKKIAPKL LVEGTRVSNL ISASPEKEWV DLWKIASDSE GTCVPATEDL LELVLRNRLQ  540
EWLLERVIGG HKSTGRDDLG QGPIHLCSFL GYTWAIRLFS SSGFSLDFRD SSGWTALHWA  600
AYHGRERMVA ALLSAGANPS LVTDPTAMSP VGSTPADLAA KQGYVGLAAY LAEKGLTAHF  660
ESMSLTKDTK RSPSRTKLTK VQSEKFENLT EQELCLKESL AAYRNAADAA SNIQAALRDR  720
TLKLQTKAIL ANPEFQAAEI VAAMRIQHAF RNYNRKKVMR AAAQIQNHFR TWKVRKNFTN  780
MRRQAIRIQA AYRGHQVRRQ YRKVIWSVGV VEKAILRWRK KRKGLRGIGN GMPVEMTVDV  840
EPASTAEEDY FQASRQQAED RFNRSVVRVQ ALFRCHRAQH EYRRMRIAHE EAKLEFSGEQ  900
QQGPARRS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G123900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3754470.0AK375447.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3094H17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563086.10.0calmodulin-binding transcription activator CBT
SwissprotQ7XHR20.0CBT_ORYSJ; Calmodulin-binding transcription activator CBT
TrEMBLI1GUA40.0I1GUA4_BRADI; Uncharacterized protein
STRINGBRADI1G27170.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98312933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators