PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G120900.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 922aa    MW: 101249 Da    PI: 7.7554
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G120900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.77.1e-22124224190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...........tekerrtraetrtgCkaklkvkkek.dgkwevt 79 
                         +fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk+           ++    + + +rtgC a+l++k+    + ++vt
  Brast06G120900.2.p 124 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKQdetnsalvaaaASPPPPRCPDSRTGCLASLTIKLIPsANAFRVT 213
                         6*****************99997666.****************999966666666554444444889***************9999***** PP

                FAR1  80 kleleHnHela 90 
                         +++ eHnH+la
  Brast06G120900.2.p 214 DFVIEHNHPLA 224
                         *********97 PP

2FAR168.22e-21272371290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevt 79 
                         fYn+YA++vGFsvr+s++k++   g i++r fvCs+eg +++ k++             + + r   + trtgC+a++++k +   +++v+
  Brast06G120900.2.p 272 FYNRYAEHVGFSVRRSYKKRK--RGVIVSRIFVCSREGVSDRAKHEglaiastnagtgaAGTPRPGPPPTRTGCQARMVIKITPCRTYRVA 360
                         9*************9976665..999****************9999*******9998876777778899********************** PP

                FAR1  80 kleleHnHela 90 
                         k+  +HnH+la
  Brast06G120900.2.p 361 KFFADHNHPLA 371
                         *********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.5E-19124224IPR004330FAR1 DNA binding domain
PfamPF031012.0E-18272371IPR004330FAR1 DNA binding domain
PfamPF105512.2E-21460554IPR018289MULE transposase domain
PROSITE profilePS509669.619728775IPR007527Zinc finger, SWIM-type
PfamPF044346.8E-6729774IPR007527Zinc finger, SWIM-type
SMARTSM005752.0E-6750777IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 922 aa     Download sequence    Send to blast
MPLICSPYGD PSTTHIDPQP PPPQPILPTP SSSSCSSPPS FLQTLAQALM STAAQPPVSV  60
SGDSSPSSPT TSGSSSRSSS AAAAGSEDPA LLGQAASTSA GDDAAVPTSP RMGMYFETED  120
DAYEFYKAYA ARLGFVVRKS NKSKNSRHTV TRRLFVCSKQ GFRQEPKKQD ETNSALVAAA  180
ASPPPPRCPD SRTGCLASLT IKLIPSANAF RVTDFVIEHN HPLASAAPAL SLAMIPSSSS  240
HHTIAAVASL PDPRDGPQTD MHFETEDDAY VFYNRYAEHV GFSVRRSYKK RKRGVIVSRI  300
FVCSREGVSD RAKHEGLAIA STNAGTGAAG TPRPGPPPTR TGCQARMVIK ITPCRTYRVA  360
KFFADHNHPL ANSETVHKLR SHKMKARAHE LGTGEHHRKK QGKGVQLGDA GAALEYLERL  420
QVGNPSVYYA VGMGPDGHSA TNFFWADAKS IIDFRSFGDV VCFDTTYGLN VYGRPFALFV  480
GVDNHKQLLV FGAALLYDDS IQSLKWVFQA FADAMRARQP KTILIDERSA CAIAAADVWP  540
GSNYCTSVWH IYHNSKRHLK QVFENSKSFG NALSQCLFDC EDEMEFLSAW EKLVEKHEIS  600
EGEWLSRLFL EKEKWALPYR RTMFSADIIT TLRKDNMINE LKRELSEQED ILQFFKRYET  660
MLEEHRSKKL QADVDGNQVT LPIPSLRMLK QASNAYTPEA FKMFQGEFED YMNCMSFPCS  720
VIGTISEHKV TLDEKPSEGI VKFDALDGSA TCSCRKFESV GIQCCHVLKV LDLKNIKELP  780
EQYILKRWRK DARSVRMGEE PNYGSVGSMR SSSEVRFGNM CRFISLIASR AAKSEEAMAY  840
IESQSSVLLK QLDDIFQTGY PEIGNHDVAS SSQAISFVGN QHPDHTTQAR AVAQTNGLTS  900
LLGISACPEP NGQLNGSVGS L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G120900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563073.30.0protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA0A2K2DLB30.0A0A2K2DLB3_BRADI; Uncharacterized protein
STRINGBRADI1G26980.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-85FAR1-related sequence 5