PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast06G120900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | FAR1 | ||||||||
Protein Properties | Length: 922aa MW: 101249 Da PI: 7.7554 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 69.7 | 7.1e-22 | 124 | 224 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...........tekerrtraetrtgCkaklkvkkek.dgkwevt 79 +fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk+ ++ + + +rtgC a+l++k+ + ++vt Brast06G120900.2.p 124 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKQdetnsalvaaaASPPPPRCPDSRTGCLASLTIKLIPsANAFRVT 213 6*****************99997666.****************999966666666554444444889***************9999***** PP FAR1 80 kleleHnHela 90 +++ eHnH+la Brast06G120900.2.p 214 DFVIEHNHPLA 224 *********97 PP | |||||||
2 | FAR1 | 68.2 | 2e-21 | 272 | 371 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevt 79 fYn+YA++vGFsvr+s++k++ g i++r fvCs+eg +++ k++ + + r + trtgC+a++++k + +++v+ Brast06G120900.2.p 272 FYNRYAEHVGFSVRRSYKKRK--RGVIVSRIFVCSREGVSDRAKHEglaiastnagtgaAGTPRPGPPPTRTGCQARMVIKITPCRTYRVA 360 9*************9976665..999****************9999*******9998876777778899********************** PP FAR1 80 kleleHnHela 90 k+ +HnH+la Brast06G120900.2.p 361 KFFADHNHPLA 371 *********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.5E-19 | 124 | 224 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 2.0E-18 | 272 | 371 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.2E-21 | 460 | 554 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.619 | 728 | 775 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 6.8E-6 | 729 | 774 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.0E-6 | 750 | 777 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 922 aa Download sequence Send to blast |
MPLICSPYGD PSTTHIDPQP PPPQPILPTP SSSSCSSPPS FLQTLAQALM STAAQPPVSV 60 SGDSSPSSPT TSGSSSRSSS AAAAGSEDPA LLGQAASTSA GDDAAVPTSP RMGMYFETED 120 DAYEFYKAYA ARLGFVVRKS NKSKNSRHTV TRRLFVCSKQ GFRQEPKKQD ETNSALVAAA 180 ASPPPPRCPD SRTGCLASLT IKLIPSANAF RVTDFVIEHN HPLASAAPAL SLAMIPSSSS 240 HHTIAAVASL PDPRDGPQTD MHFETEDDAY VFYNRYAEHV GFSVRRSYKK RKRGVIVSRI 300 FVCSREGVSD RAKHEGLAIA STNAGTGAAG TPRPGPPPTR TGCQARMVIK ITPCRTYRVA 360 KFFADHNHPL ANSETVHKLR SHKMKARAHE LGTGEHHRKK QGKGVQLGDA GAALEYLERL 420 QVGNPSVYYA VGMGPDGHSA TNFFWADAKS IIDFRSFGDV VCFDTTYGLN VYGRPFALFV 480 GVDNHKQLLV FGAALLYDDS IQSLKWVFQA FADAMRARQP KTILIDERSA CAIAAADVWP 540 GSNYCTSVWH IYHNSKRHLK QVFENSKSFG NALSQCLFDC EDEMEFLSAW EKLVEKHEIS 600 EGEWLSRLFL EKEKWALPYR RTMFSADIIT TLRKDNMINE LKRELSEQED ILQFFKRYET 660 MLEEHRSKKL QADVDGNQVT LPIPSLRMLK QASNAYTPEA FKMFQGEFED YMNCMSFPCS 720 VIGTISEHKV TLDEKPSEGI VKFDALDGSA TCSCRKFESV GIQCCHVLKV LDLKNIKELP 780 EQYILKRWRK DARSVRMGEE PNYGSVGSMR SSSEVRFGNM CRFISLIASR AAKSEEAMAY 840 IESQSSVLLK QLDDIFQTGY PEIGNHDVAS SSQAISFVGN QHPDHTTQAR AVAQTNGLTS 900 LLGISACPEP NGQLNGSVGS L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast06G120900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003563073.3 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
TrEMBL | A0A2K2DLB3 | 0.0 | A0A2K2DLB3_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G26980.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-85 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Brast06G120900.2.p |