PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G120100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 402aa    MW: 42583.9 Da    PI: 6.6416
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G120100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81e-171360148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg W++eEde+l+++++ +G  +W++++++ g+ R++k+c++rw +yl
  Brast06G120100.1.p 13 RGLWSPEEDEKLLRYITVHGQTCWSSVPKHAGLQRCGKSCRLRWINYL 60
                        788*******************************************97 PP
2Myb_DNA-binding49.87.8e-1666109146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg ++++E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
  Brast06G120100.1.p  66 RGTFSEQEERTILDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                         899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-26463IPR009057Homeodomain-like
PROSITE profilePS5129418.879860IPR017930Myb domain
SuperFamilySSF466891.54E-2710107IPR009057Homeodomain-like
SMARTSM007171.3E-131262IPR001005SANT/Myb domain
PfamPF002499.2E-161360IPR001005SANT/Myb domain
CDDcd001676.67E-121660No hitNo description
PROSITE profilePS5129425.33861115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2464116IPR009057Homeodomain-like
SMARTSM007172.1E-1565113IPR001005SANT/Myb domain
PfamPF002491.3E-1466109IPR001005SANT/Myb domain
CDDcd001672.00E-1168108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLLRYITV HGQTCWSSVP KHAGLQRCGK SCRLRWINYL  60
RPDLKRGTFS EQEERTILDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGI  120
DPKTHNLLPA ASKSLLHGAG AANNNNNPAA SAGQFQPSNA NGTTPFTISS PTKAAVATVA  180
PLPAVSMAPA LYDYNVVPNP GASGMLMGHE HAAAAMQLQQ SGYPSSYDAG NGGGVLMNFR  240
DQNSHAASMS MEDFMNASSN SSSSMEHAAS GMPNGNNGFN DVVVPAAMGG MASFLDDEAA  300
AMWATTVEEG MSGPGMLQQQ QGLLVQDQEV IVGPPLMATT NARGPVGNGN GKGAVDMMDV  360
SSAVYSTAGA TAAFDLELME SCGMFYGGGA GTGMEQLQWD Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-33131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G120100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560182.11e-177myb-related protein Hv33
TrEMBLI1GU761e-175I1GU76_BRADI; Uncharacterized protein
STRINGBRADI1G26920.11e-176(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97513545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.13e-82myb domain protein 67