PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G101600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 572aa    MW: 64544.5 Da    PI: 6.5699
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G101600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.73e-1292025702373
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         ++lL++cAea+s++ +e+  +l+++ + ++s +g+p+qRl ay++e+L ar  +s++++y+al++++ +   s+e l+++k++++++P++k
  Brast06G101600.1.p 202 KQLLTKCAEALSEDRTEEFLKLVQEARGIVSINGEPIQRLGAYLLEGLVARHGNSGTNIYRALRCRKPE---SKELLSYMKILYNICPYFK 289
                         689*****************************************************************9...9****************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                         f++++aN aI ea+ +e+ +HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+  + e le +g+ L+ + +e+++p+ef++l
  Brast06G101600.1.p 290 FGYMAANGAIAEALRSEDNIHIIDFQIAQGTQWITLIQALAARPGGPPHVRITGIDDPVSEyaRGEGLEIVGNMLKGMSKEFNIPLEFTPL 380
                         **********************************************************999999**************************6 PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                              ++++ e+L+++pgEalaVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+ +n+++F+ rf+e+++yysa+f+s++
  Brast06G101600.1.p 381 -PVYATQVTKEMLEIRPGEALAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFMMRFAETMDYYSAMFESID 470
                         .77788999********************************************************************************** PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                         a+lpr+++eri+vE+++l+++ivn++aceg++r+erhe l+kW++rl++aGFkp+pls+++++ +k ll+ ++ d y++ee++g+++lgWk
  Brast06G101600.1.p 471 ANLPRDNKERISVEQHCLAKDIVNIIACEGKDRVERHELLGKWKSRLTMAGFKPYPLSSYVNSVIKKLLACYS-DKYTLEEKDGAMLLGWK 560
                         **********************************************************************999.55*************** PP

                GRAS 364 drpLvsvSaW 373
                         +r+L+s+SaW
  Brast06G101600.1.p 561 KRKLISASAW 570
                         ********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.112175552IPR005202Transcription factor GRAS
PfamPF035141.0E-126202570IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MDLHQLLKYR LTGANVLYEI PTENNLTNSS WPTSPLKLEY NNSPYTPLST QLECDNLSAL  60
SNTPDNQSST ETISAQPISP LEADSSYIQP GSHLCENIQV RADPLYARSR HNMQHALREI  120
ETVLMAPDAD DATTSTKHEF EETKPAQLMR QRSRTWSHES RQPLPGVVRP QFASGGYPMA  180
SYEFRPEKRQ RELRDDPQII VKQLLTKCAE ALSEDRTEEF LKLVQEARGI VSINGEPIQR  240
LGAYLLEGLV ARHGNSGTNI YRALRCRKPE SKELLSYMKI LYNICPYFKF GYMAANGAIA  300
EALRSEDNIH IIDFQIAQGT QWITLIQALA ARPGGPPHVR ITGIDDPVSE YARGEGLEIV  360
GNMLKGMSKE FNIPLEFTPL PVYATQVTKE MLEIRPGEAL AVNFTLQLHH TPDESVDVNN  420
PRDGLLRMVK GLSPKVTTLV EQESHTNTTP FMMRFAETMD YYSAMFESID ANLPRDNKER  480
ISVEQHCLAK DIVNIIACEG KDRVERHELL GKWKSRLTMA GFKPYPLSSY VNSVIKKLLA  540
CYSDKYTLEE KDGAMLLGWK KRKLISASAW H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-711855703378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G101600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3597010.0AK359701.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1101A23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562960.10.0chitin-inducible gibberellin-responsive protein 1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLI1GTP00.0I1GTP0_BRADI; Uncharacterized protein
STRINGBRADI1G25370.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106313643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]