PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G101400.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GeBP
Protein Properties Length: 308aa    MW: 33682.6 Da    PI: 4.7575
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G101400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57340.11e-12129217498
              DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkv.sksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                          r+ws +De+ +L +l   ++++g+ p+   da+++ ++++++ ++  +++l +K   L++++++  k+   g+  + +kehd+  ++ls 
  Brast06G101400.2.p 129 PRIWSTDDEVRILEALAAHRQEHGVLPQP--DALMDALSGKLDNRAyGSKELQSKQTTLRQRYNNAIKR---GE--VPTKEHDRRLYDLSD 212
                         69**********************77766..5899******9987516889*****************9...54..5689*********** PP

              DUF573  94 kiWgs 98 
                         ++Wgs
  Brast06G101400.2.p 213 IVWGS 217
                         ***95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.3E-19129216IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MAPKRGAKSS APPPPPPPPP AASSEETEDE ETAVVSPPPP TRNPPPPPPP PQNGNDSESS  60
DEEEEPARAA APKNPPPAPQ QQGKESDEES ESSESDEEAP PPEQAPKMAA EKLKPPPSSG  120
EAKKPGGIPR IWSTDDEVRI LEALAAHRQE HGVLPQPDAL MDALSGKLDN RAYGSKELQS  180
KQTTLRQRYN NAIKRGEVPT KEHDRRLYDL SDIVWGSGKA AAAKANGDEP RTFAQMCELY  240
PYLAEEVKEL EGEYPGMFKR GFEKINDDRA RAMDAKIKRQ RLVQMKVEMR RGDLAKEVCK  300
TLIELLD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275280KIKRQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G101400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311955.11e-143uncharacterized protein LOC100829980 isoform X2
RefseqXP_024311956.11e-143uncharacterized protein LOC100829980 isoform X2
TrEMBLA0A0Q3I5L81e-136A0A0Q3I5L8_BRADI; Uncharacterized protein
TrEMBLI1IER01e-137I1IER0_BRADI; Uncharacterized protein
STRINGBRADI5G00487.11e-142(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.17e-10DNA-binding storekeeper protein-related transcriptional regulator