PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G092200.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 989aa    MW: 109078 Da    PI: 8.2275
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G092200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.41.3e-18497596198
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+k l+ sd+++ grlvlpkk+ae++   ++++e++ l+++d sg++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++ 
  Brast06G092200.2.p 497 FEKMLSASDAGRIGRLVLPKKCAETYfpPISNPEGVPLKVQDGSGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMHLQAGDIVTFSRID- 585
                         89**************************666678899***************9989999999***9.********************987. PP

                         SEE..EEEEE- CS
                  B3  88 sefelvvkvfr 98 
                          e++l +++++
  Brast06G092200.2.p 586 PEGKLIMGFRK 596
                         66666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-30493603IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-20494600IPR015300DNA-binding pseudobarrel domain
CDDcd100174.76E-24495596No hitNo description
PROSITE profilePS5086311.307497598IPR003340B3 DNA binding domain
PfamPF023624.2E-16497596IPR003340B3 DNA binding domain
SMARTSM010191.0E-21497597IPR003340B3 DNA binding domain
PROSITE profilePS5105014.727744794IPR011124Zinc finger, CW-type
PfamPF074963.8E-12749791IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 989 aa     Download sequence    Send to blast
MSSPAPPRPP APSAPAPAPA PTATPMSVQP PPPQPKPPPP QQPSGSSAPP PPQFHPPASH  60
QQPQPHPAAS HQQTQPHPAV SHQQPQQPHP SASHQQQQQP HPPASHQQRP RICFNTHCKD  120
PKSEGSRRRG WRLRSGDFAE LCDRCYGSFE QGSFCETFHS EVAGWRNCEA CGKRLHCGCI  180
VSIHAYALLD AGGVDCILCT RKSYAAAAMA PNQMCQTPTM HMPQNVVDKK DSFVKSWRPP  240
GGQYPSQWRQ NNLWSVSSIQ SDLQQRLAYE FDRPSGSEKL PPGRTFIHAQ EKKFDDMHDR  300
PTTPAGMNQI IRDRHADGHG QQTSMDPTHS YALYQREGPN PNSLHDHSHH GGESDSSSAR  360
KGIVSDGSSS NIVSSGFKLD SRHPLESLLK ENISLLPVGV GCTITNCPPV NGRNDIVRII  420
PHQPTSQTPS SVASSAQKQF YSHTVIDPEY QSHFRNGKPR MDAKARSQLL PRYWPRITDK  480
ELQHLSADSK SVITPLFEKM LSASDAGRIG RLVLPKKCAE TYFPPISNPE GVPLKVQDGS  540
GKEWVFQFRF WPNNNSRMYV LEGVTPCIQS MHLQAGDIVT FSRIDPEGKL IMGFRKSTTQ  600
EQILRQEKPT KPANAAVTAP PELNVNVPRP HEVNTENKDS SPVDQAAVGK VENGGVAQKE  660
GPGTARSSPG SLKRKATSVG PKIKRFRMDN EESMELKITW EEAQELLRPP LKAPSIVIVD  720
GHEFEEYEEP PILGRRTYFV ADQSGENHQW AQCEDCSKWR KLPVGALLPS KWTCSDNKWD  780
PERTSCESPQ EATTEELAEL IPIKAGAAKK SKARIEPDSI DVSDGLDTLA NLAILGEGES  840
LPSQPTTKHP RHRPGCSCIV CIQPPSGKGP KHKQTCTCNV CMTVRRRFKT LMLRREKRQS  900
EKDSEEPRRK EVPQTGSDQP LGSISPTSSP QKADANADDA EDMAIDHRMS SSPVKNQIDL  960
NIQPEREDEQ SPKSNAAGAA RLPRDNPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-604755972124B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G092200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236989.10.0B3 domain-containing protein Os07g0563300 isoform X2
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLI1GTG40.0I1GTG4_BRADI; Uncharacterized protein
STRINGBRADI1G24720.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-146HSI2-like 1