PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G092200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 995aa    MW: 109810 Da    PI: 8.2865
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G092200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.41.3e-18503602198
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+k l+ sd+++ grlvlpkk+ae++   ++++e++ l+++d sg++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++ 
  Brast06G092200.1.p 503 FEKMLSASDAGRIGRLVLPKKCAETYfpPISNPEGVPLKVQDGSGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMHLQAGDIVTFSRID- 591
                         89**************************666678899***************9989999999***9.********************987. PP

                         SEE..EEEEE- CS
                  B3  88 sefelvvkvfr 98 
                          e++l +++++
  Brast06G092200.1.p 592 PEGKLIMGFRK 602
                         66666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-30499609IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-20500606IPR015300DNA-binding pseudobarrel domain
CDDcd100174.81E-24501602No hitNo description
PROSITE profilePS5086311.307503604IPR003340B3 DNA binding domain
SMARTSM010191.0E-21503603IPR003340B3 DNA binding domain
PfamPF023624.2E-16503602IPR003340B3 DNA binding domain
PROSITE profilePS5105014.727750800IPR011124Zinc finger, CW-type
PfamPF074963.8E-12755797IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 995 aa     Download sequence    Send to blast
MSSPAPPRPP APSAPAPAPA PTATPMSVQP PPPQPKPPPP QQPSGSSAPP PPQFHPPASH  60
QQPQPHPAAS HQQTQPHPAV SHQQPQQPHP SASHQQQQQP HPPASHQQRP RICFNTHCKD  120
PKSEGSRRRG WRLRSGDFAE LCDRCYGSFE QGSFCETFHS EVAGWRNCEA CGKRLHCGCI  180
VSIHAYALLD AGGVDCILCT RKSYAAAAMA PNQMCQTPTM HMPQNVVDKK DSFVKSWRPP  240
GGQYPSQWRQ NNLWSVSSIQ SDLQQRLAYE FDRPSGSEKL PPGRTFIHAQ EKKFDDMHDR  300
PTTPAGMNQI IRDRHADGHG QQTSMDPTHS YALYQREGPN PNSLHDHSHH GGESDSSSAR  360
KGIVSDGSSS NIVSSGFKLD SRHPLESLLK ENISLLPVGV GCTITNCPPV NGRNDIVRII  420
PHQPTSQTPS SVASSAQKQF YSHTVIDPEY QSHFRNGKPR MDAKARSQLL PRYWPRITDK  480
ELQHLSAEYP KNTNSKSVIT PLFEKMLSAS DAGRIGRLVL PKKCAETYFP PISNPEGVPL  540
KVQDGSGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMHLQ AGDIVTFSRI DPEGKLIMGF  600
RKSTTQEQIL RQEKPTKPAN AAVTAPPELN VNVPRPHEVN TENKDSSPVD QAAVGKVENG  660
GVAQKEGPGT ARSSPGSLKR KATSVGPKIK RFRMDNEESM ELKITWEEAQ ELLRPPLKAP  720
SIVIVDGHEF EEYEEPPILG RRTYFVADQS GENHQWAQCE DCSKWRKLPV GALLPSKWTC  780
SDNKWDPERT SCESPQEATT EELAELIPIK AGAAKKSKAR IEPDSIDVSD GLDTLANLAI  840
LGEGESLPSQ PTTKHPRHRP GCSCIVCIQP PSGKGPKHKQ TCTCNVCMTV RRRFKTLMLR  900
REKRQSEKDS EEPRRKEVPQ TGSDQPLGSI SPTSSPQKAD ANADDAEDMA IDHRMSSSPV  960
KNQIDLNIQP EREDEQSPKS NAAGAARLPR DNPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-594756032124B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G092200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236982.10.0B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A0Q3GXM20.0A0A0Q3GXM2_BRADI; Uncharacterized protein
STRINGBRADI1G24720.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-149HSI2-like 1