PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast06G087800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GRAS | ||||||||
Protein Properties | Length: 471aa MW: 50136.8 Da PI: 6.2386 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 363.1 | 4e-111 | 74 | 447 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPil 91 +lLl+cAeav+ ++l +a+ lL ++ elasp g++ +R+aayf AL ar+++s + y+ lp ++++++ s ++++a+++++ +sP++ Brast06G087800.1.p 74 LSLLLRCAEAVAMDSLPEARDLLHEIAELASPFGSSPERVAAYFGDALCARVLSSYLGAYSPLPLAPAQQQQqSRRVASAFQAYNALSPLV 164 689************************************************************88777766648888999*********** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egpp..slRiTgvgspesgskeeleetgerLakfAeelgvpfe 177 kfsh+taN+aIl+a++ge+rvH++D+di+qGlQWp L++ LasRp +++p slR+Tg+g+ s ++le+tg+rLa+fA++lg+pfe Brast06G087800.1.p 165 KFSHFTANKAILQALHGEDRVHVVDLDIMQGLQWPGLFHMLASRPcsnSSKPllSLRVTGLGA----SLDALEATGRRLADFAASLGLPFE 251 *********************************************9985555579********....9*********************** PP GRAS 178 fnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267 f+++ k + ++++L ++ gEa++V++++ h l+d ++s + +L++++sl+Pk+v++veq++ h +++Fl rf+eal+yysal Brast06G087800.1.p 252 FRPVEGKIGHVADTDALLLRDeGEATVVHWMH--HCLYDVTGSDAG----TLRVLRSLRPKLVTIVEQDLGH-GGDFLGRFVEALHYYSAL 335 ***8666667779999988888*********9..888888888888....**********************.789*************** PP GRAS 268 fdsleak......lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352 fd+l a+ + +e+ +r+ vEr+llg ei+n+va g +r+ + + +e+W + l++aGF+pv+ls a+qa++ll +++++gy++ Brast06G087800.1.p 336 FDALGAGagagagAEEEEAQRHAVERQLLGAEIRNIVAVGGPKRTGEVR-VERWGDELRRAGFRPVSLSGGPAAQARMLLGMCPWKGYTLA 425 ****8874555545555599***********************998887.9**************************************** PP GRAS 353 eesgslvlgWkdrpLvsvSaWr 374 ee+g+l lgWkd +L+++S+W+ Brast06G087800.1.p 426 EEDGCLKLGWKDLSLLTASSWE 447 *********************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 57.482 | 47 | 427 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-108 | 74 | 447 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0090610 | Biological Process | bundle sheath cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MIQGVLSRAS AADAAAMKAA KRAASIPEDE EAMVSSRGKR LQLHGSGVHQ QQQGSPAAEE 60 GKVSAAETRG LRLLSLLLRC AEAVAMDSLP EARDLLHEIA ELASPFGSSP ERVAAYFGDA 120 LCARVLSSYL GAYSPLPLAP AQQQQQSRRV ASAFQAYNAL SPLVKFSHFT ANKAILQALH 180 GEDRVHVVDL DIMQGLQWPG LFHMLASRPC SNSSKPLLSL RVTGLGASLD ALEATGRRLA 240 DFAASLGLPF EFRPVEGKIG HVADTDALLL RDEGEATVVH WMHHCLYDVT GSDAGTLRVL 300 RSLRPKLVTI VEQDLGHGGD FLGRFVEALH YYSALFDALG AGAGAGAGAE EEEAQRHAVE 360 RQLLGAEIRN IVAVGGPKRT GEVRVERWGD ELRRAGFRPV SLSGGPAAQA RMLLGMCPWK 420 GYTLAEEDGC LKLGWKDLSL LTASSWEPMS SDGDGQDDLG AAARQEGHGS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-153 | 56 | 450 | 2 | 382 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast06G087800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003560068.1 | 0.0 | scarecrow-like protein 23 | ||||
Swissprot | Q9FHZ1 | 1e-161 | SCL23_ARATH; Scarecrow-like protein 23 | ||||
TrEMBL | I1GTB5 | 0.0 | I1GTB5_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G24310.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1371 | 38 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41920.1 | 1e-145 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast06G087800.1.p |
Publications ? help Back to Top | |||
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