PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G085900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 296aa    MW: 32039.1 Da    PI: 8.3348
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G085900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-05268289323
                         ETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                         Cp+C+k F+++ +L+ H  + H
  Brast06G085900.1.p 268 CPKCSKGFRDPVLLVEHVEReH 289
                         *****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183103.27E-13459No hitNo description
PROSITE profilePS510397.3411059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.108.9E-101153IPR000058Zinc finger, AN1-type
SMARTSM001540.00641352IPR000058Zinc finger, AN1-type
PfamPF014285.1E-131351IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.5E-1091152IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.0E-993147No hitNo description
PROSITE profilePS510397.97698145IPR000058Zinc finger, AN1-type
SMARTSM001540.0083101142IPR000058Zinc finger, AN1-type
PfamPF014283.2E-8101140IPR000058Zinc finger, AN1-type
SMARTSM003550.8229252IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280231252IPR007087Zinc finger, C2H2
SMARTSM003559.5266289IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.787266294IPR007087Zinc finger, C2H2
PROSITE patternPS000280268289IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVGDCNQ IDFLPFTCDR CDHVFCLQHR SYTSHKCLNA NKKDVTVLIC  60
PLCAKGVRLN PNEDANITWD SHVNTDCDPS NYQKATKKKK CPVPGCREAL TFSNTIRCKD  120
CSNEHCLKHR FGPDHKCPGP RKMEPTFPFA NMLRRSQKVQ PRTSTSSSSG SSSWWSSSLL  180
NAASSLRSSA EAGMQKLSIA TSEAVQMAKD GITPNSGSTS SSSSGALVEQ CVQCPARFST  240
VGALIEHAEK SHGNNSQSSR GKVTIDACPK CSKGFRDPVL LVEHVEREHG GTSTA*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G085900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562919.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ0D5B91e-166SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLI1GT940.0I1GT94_BRADI; Uncharacterized protein
STRINGBRADI1G24140.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47633342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-115C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]