PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G077000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 799aa    MW: 85518.3 Da    PI: 5.894
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G077000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.4e-056789123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ Cgk F r  nL+ H r H
  Brast06G077000.1.p 67 FVCEVCGKGFQRDQNLQLHRRGH 89
                        89******************988 PP
2zf-C2H215.54.8e-05146167223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          Cp Cgk++  + +Lk H +t+
  Brast06G077000.1.p 146 ACPRCGKRYAVQADLKAHAKTC 167
                         6******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.39E-86689No hitNo description
PROSITE profilePS5015711.6356789IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-56789IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0146789IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM0035585110140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-5133166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.39E-8140165No hitNo description
PROSITE profilePS501578.663145173IPR007087Zinc finger, C2H2
SMARTSM0035590145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MVDKGELRKA GELVGTAAAP DRAEMPPNPT EPAPAPAKKK RNLPGTPDPD AEVIALSPGT  60
LMATNRFVCE VCGKGFQRDQ NLQLHRRGHN LPWRLRQRGP GAAPPRRRVY VCPEPGCVHH  120
SPARALGDLT GIKKHFCRKH GEKRWACPRC GKRYAVQADL KAHAKTCGTR EYRCDCGTLF  180
TRRDSFVTHR AFCGALVEET GRALTVPAPP SPRPPDLVEV EENVVKDKEK EEENVDRDKE  240
TEDEEKGGEE DNGTSAEAAT EEPQRVEAAT EETQRSPSPP SPLPLEQQPV VAVVPDVDET  300
EVVAEPIMDV KQEEEDKGDE DVCFQEADQY DGAELEDSNL PDKDNDTPML PCFVPAPSDA  360
IGTDGSGTSC GSISSASNSI APATTTSTFA GLFASATTSA TPQSRSLRDL IGVDPTFLCL  420
AIGAPSFPQT NASNPGSFAP PPAPHMSATA LLQKAAEVGA SQSSSSFLKE FGLASSSSST  480
PSRPPQRSID GPTQCQLPQG RFTENSTHSK LSQGRFVDNS PPSQQHQGRP QERFFDNSIP  540
SNPPQGKFCH NSPPSNLPQG RFCHNSPPSN PPQGRFLGNS PPSSVPQGRF FGNSPPSDLP  600
QGRFFGNLPP SNLSQGRFVE YSPSSKLTPG QFISNPPLPK LPQGRYIDSS PLPNLPQGRY  660
VDSSPPSKVP HGRYIDNSPP CKQSQGMFVD NSAQQWHHRS NQLMDMEPRP MLSGSLGLGL  720
AYNGANPGLP DLMMGQSPLF GPKPATLDFL GLGIGGTMGG STANGGLPAL MVGGELDMGS  780
AQAPWEEAKR NTNGRTIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-29141202364Zinc finger protein JACKDAW
5b3h_F2e-29141202364Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G077000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3574170.0AK357417.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1052O01.
GenBankAK3621750.0AK362175.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2003A13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562821.20.0protein indeterminate-domain 1
TrEMBLI1GT030.0I1GT03_BRADI; Uncharacterized protein
STRINGBRADI1G23470.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118292836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.16e-89C2H2 family protein