PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast06G075300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GRAS | ||||||||
Protein Properties | Length: 550aa MW: 60985.9 Da PI: 6.178 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 439.6 | 2.3e-134 | 179 | 548 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l+elL++cA+av++++ +++ ++ +l++++s +g+p+qRl ay++e+L arla+s++++ykal+++e + ss+ l+++++++e++P++ Brast06G075300.1.p 179 LKELLVACARAVEEKNSYAIDMMIPELRKMVSVSGEPIQRLGAYMVEGLVARLASSGHSIYKALKCKEPK---SSDLLSYMHFLYEACPYF 266 5799*****************************************************************9...9***************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 kf+++ aN aI eav+ge+r+HiiDf isqG+QW++LlqaLa+Rp+gpp+++iTg++++ s + l +g+rL+++A ++vpfef++ Brast06G075300.1.p 267 KFGYMSANGAIAEAVKGEDRIHIIDFHISQGAQWISLLQALAARPGGPPTVKITGIDDSVSAyaRDGGLDIVGRRLSHIAGLCKVPFEFHA 357 **********************************************************888898999************************ PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 va +++e +L v pgEalaVn+ l+lh++ de+vs++++rd++L+lvkslsP+v+++veqe+++n+++F++rf+e+l+yy+a+f+s+ Brast06G075300.1.p 358 -VAICGDEVEEGHLGVIPGEALAVNFTLELHHISDETVSTANHRDRILRLVKSLSPNVLTLVEQESNTNTAPFVQRFAETLDYYTAIFESI 447 .7999************************************************************************************** PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 + +lpr+++eri++E+++l+reivn+vaceg+er+erhe ++kW++rl++aGF+p pls+ +++++++ll+ ++++ y++ e++g l+lgW Brast06G075300.1.p 448 DLTLPRDDKERINMEQHCLAREIVNLVACEGSERVERHEVFGKWKARLMMAGFRPSPLSSLVNDTIRALLQSYSVN-YQLAERDGVLYLGW 537 **************************************************************************88.************** PP GRAS 363 kdrpLvsvSaW 373 k+rpLv+ SaW Brast06G075300.1.p 538 KNRPLVVSSAW 548 *********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 69.149 | 153 | 530 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.8E-132 | 179 | 548 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol |
Sequence ? help Back to Top |
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Protein Sequence Length: 550 aa Download sequence Send to blast |
MANTPTSRMM HPFGSVPRQN LKQFQYSDNA QHPYHPYQSS PDTHVVPQHD YSLKSHSPDA 60 GFENQVTHMK YTLDSSAAVG CMRHDSPSSH SFTPRSDSGS PLSQEDSHSD STNGSPVSAS 120 CVTVTEDPND LRQKLKDLEA VMLGPDSEAV NSLESSIANQ LSLEPEKWVQ MMRFPRDNLK 180 ELLVACARAV EEKNSYAIDM MIPELRKMVS VSGEPIQRLG AYMVEGLVAR LASSGHSIYK 240 ALKCKEPKSS DLLSYMHFLY EACPYFKFGY MSANGAIAEA VKGEDRIHII DFHISQGAQW 300 ISLLQALAAR PGGPPTVKIT GIDDSVSAYA RDGGLDIVGR RLSHIAGLCK VPFEFHAVAI 360 CGDEVEEGHL GVIPGEALAV NFTLELHHIS DETVSTANHR DRILRLVKSL SPNVLTLVEQ 420 ESNTNTAPFV QRFAETLDYY TAIFESIDLT LPRDDKERIN MEQHCLAREI VNLVACEGSE 480 RVERHEVFGK WKARLMMAGF RPSPLSSLVN DTIRALLQSY SVNYQLAERD GVLYLGWKNR 540 PLVVSSAWH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-65 | 183 | 549 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast06G075300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003562815.1 | 0.0 | chitin-inducible gibberellin-responsive protein 2 | ||||
Swissprot | Q8GVE1 | 0.0 | CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2 | ||||
TrEMBL | I1GSZ1 | 0.0 | I1GSZ1_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G23350.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1513 | 37 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50600.1 | 0.0 | scarecrow-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Brast06G075300.1.p |
Publications ? help Back to Top | |||
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