PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast06G070500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 233aa MW: 23137 Da PI: 8.9848 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11 | 0.0013 | 87 | 109 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cgk++ + L H +H Brast06G070500.1.p 87 YECSVCGKVYASYQALGGHKTSH 109 99********9999998887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.02E-8 | 85 | 109 | No hit | No description |
SMART | SM00355 | 0.04 | 87 | 109 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.034 | 87 | 114 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.6E-13 | 87 | 111 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 89 | 109 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.02E-8 | 139 | 166 | No hit | No description |
Pfam | PF13912 | 4.5E-12 | 143 | 168 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.5 | 144 | 166 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.203 | 144 | 166 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 146 | 166 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MDPSASIVEE APRAKSPVPP PPSPPRMDSW GARGGRGSRR RGAGSGSGGG AESEEEYLAL 60 CLVMLARGVR GDVKGAGAAP AAATKGYECS VCGKVYASYQ ALGGHKTSHR KPPTPQPPAA 120 QAQAASEEAA PGAAVVAAAE AKVHRCSLCL RTFPSGQALG GHKRLHYEGG SGGGDGTTKE 180 AGAKAKAAAA LLRDFDLNLP AAAPGTAGGD DAEAESAPPE AKRARLVLLA AV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast06G070500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108320 | 5e-44 | AK108320.1 Oryza sativa Japonica Group cDNA clone:002-141-H01, full insert sequence. | |||
GenBank | AP005149 | 5e-44 | AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07. | |||
GenBank | AP014963 | 5e-44 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 5e-44 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003560019.1 | 4e-71 | zinc finger protein 36 | ||||
TrEMBL | I1GSU7 | 9e-70 | I1GSU7_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G22940.1 | 2e-70 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10028 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49930.1 | 8e-23 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast06G070500.1.p |