PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G066900.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 380aa    MW: 42377.7 Da    PI: 7.0432
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G066900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY893.9e-28109164259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         dDgynWrKYGqK vkg ++prsYY+Ct  +Cpv+k+ve+s+ d+k+++i+Y+g+H he
  Brast06G066900.2.p 109 DDGYNWRKYGQKAVKGGRYPRSYYKCTL-NCPVRKNVEHSE-DGKIIKIIYRGQHSHE 164
                         8*************************97.7**********9.***************8 PP
2WRKY101.55e-32273331159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+v+g+++prsYY+Ct++gC vkk++ers+++p++v++tYeg+H h+
  Brast06G066900.2.p 273 LDDGYRWRKYGQKVVRGNPHPRSYYKCTHQGCDVKKHIERSSQEPHAVITTYEGKHVHD 331
                         59*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-25105166IPR003657WRKY domain
SuperFamilySSF1182904.32E-22107166IPR003657WRKY domain
SMARTSM007742.2E-29108165IPR003657WRKY domain
PROSITE profilePS5081121.631109166IPR003657WRKY domain
PfamPF031066.5E-23109163IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-34260333IPR003657WRKY domain
SuperFamilySSF1182903.53E-28266333IPR003657WRKY domain
PROSITE profilePS5081135.45268333IPR003657WRKY domain
SMARTSM007741.5E-36273332IPR003657WRKY domain
PfamPF031062.6E-24274330IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MFHAQDLAQL AAQVAQKAEL EETQSGELNP KITHQLAYTK YSILDQAHNS SFSSATSAQT  60
SQHVSSSVIV PSMRCVPTLP SHTECIKTES NRVSQVLQGA SITLDRPADD GYNWRKYGQK  120
AVKGGRYPRS YYKCTLNCPV RKNVEHSEDG KIIKIIYRGQ HSHERPSKRY KDCDILLKES  180
DDFNDTEDAS TKSQLDCLGY DGRPVTSIGT VADYLLPTRE GGDEKVSGTS DNQGEGDDET  240
QTADEAVRDT DANERNAPGQ KIIVSTTSDV DLLDDGYRWR KYGQKVVRGN PHPRSYYKCT  300
HQGCDVKKHI ERSSQEPHAV ITTYEGKHVH DVPVSRNRSR DAGQPYCTEQ TYSEQSSASF  360
CSRSEKAKYS TIILKHLAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-34109333878Probable WRKY transcription factor 4
2lex_A5e-34109333878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G066900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236040.10.0probable WRKY transcription factor 3 isoform X2
TrEMBLI1GSR70.0I1GSR7_BRADI; Uncharacterized protein
STRINGBRADI1G22680.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.13e-69WRKY DNA-binding protein 3