PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G065800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 402aa    MW: 42577.1 Da    PI: 7.1047
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G065800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000171638123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ Cgk Fs   +L  H+r+H
  Brast06G065800.1.p 16 HTCKVCGKGFSGGRSLGGHMRSH 38
                        79*******************99 PP
2zf-C2H2193.9e-0691112323
                         ETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                         C  Cgk F ++ +L rH+r+ H
  Brast06G065800.1.p  91 CRECGKLFASWRSLFRHLRRdH 112
                         ********************99 PP
3zf-C2H215.35.8e-05295317123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+Cp Cg++Fs+   L  H  +H
  Brast06G065800.1.p 295 YECPGCGRVFSSYQALGGHRASH 317
                         99***********9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.7E-61538IPR007087Zinc finger, C2H2
SuperFamilySSF576679.03E-91538No hitNo description
SMARTSM003550.0231638IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.1E-41638IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8241643IPR007087Zinc finger, C2H2
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
SuperFamilySSF576679.03E-984109No hitNo description
SMARTSM003550.03689112IPR015880Zinc finger, C2H2-like
PfamPF139120.08189112IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.94689117IPR007087Zinc finger, C2H2
PROSITE patternPS00028091112IPR007087Zinc finger, C2H2
SuperFamilySSF576679.96E-5292319No hitNo description
PfamPF139122.3E-11294319IPR007087Zinc finger, C2H2
SMARTSM003550.054295317IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.429295322IPR007087Zinc finger, C2H2
PROSITE patternPS000280297317IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MDHELAGGGA GMVTTHTCKV CGKGFSGGRS LGGHMRSHIS HGEAAVVAVS GAGGSNGGGG  60
AYGLRENPKK TRRLSDFAAE DGEEGGGYRA CRECGKLFAS WRSLFRHLRR DHDGDEEEDD  120
GDEEDDQLLG GEEFFADEPA AEAEPPAVMA APPRRRRRSM RVAAPAPPVD SFEKEQEDVA  180
LCLLMLSRDT AAPAPPQKEE PPPPLEDYRK KKKTPPKPKP KPKPVSYAPR NAYSSDNDDA  240
SAQPLHYDDG GKIIKSSSTT KKRRSSGGHY YAAPNSSSPN PKQQPPPPPA KRTRYECPGC  300
GRVFSSYQAL GGHRASHKRI NTSCSAPKPA AAPEPSVETA YTASSFSTPS PSSASAATIG  360
AARKKEKLEC ELYCGGAGAE QDEHVALDLN FPPAPSSEDA P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G065800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646241.11e-78uncharacterized protein LOC107278250
TrEMBLA0A446KSP45e-79A0A446KSP4_TRITD; Uncharacterized protein
STRINGTraes_2BS_ACA52BC08.19e-79(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.14e-08C2H2-like zinc finger protein