PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G053300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CAMTA
Protein Properties Length: 1033aa    MW: 114541 Da    PI: 5.5712
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G053300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1177.51.7e-55211362117
                CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                         l+ ++rwl+++ei++iL n++k++++ e+++rp+sgsl+L++rk++ryfrkDG+ w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een+
  Brast06G053300.1.p  21 LEAQNRWLRPTEICQILYNYKKFSIAPEPPNRPPSGSLFLFDRKILRYFRKDGHIWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENE 111
                         5679*************************************************************************************** PP

                CG-1  93 tfqrrcywlLeeelekivlvhylev 117
                         +fqrr+ywlLee + +ivlvhyl+ 
  Brast06G053300.1.p 112 NFQRRTYWLLEEGFMNIVLVHYLDI 136
                         **********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143779.80816142IPR005559CG-1 DNA-binding domain
SMARTSM010768.6E-7719137IPR005559CG-1 DNA-binding domain
PfamPF038592.7E-5022135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.3E-5446532IPR013783Immunoglobulin-like fold
SuperFamilySSF812968.09E-17447532IPR014756Immunoglobulin E-set
PfamPF018338.2E-6447520IPR002909IPT domain
CDDcd002044.48E-13610737No hitNo description
SuperFamilySSF484033.58E-16626739IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.8E-17634740IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.21645739IPR020683Ankyrin repeat-containing domain
PfamPF127962.4E-6651740IPR020683Ankyrin repeat-containing domain
SMARTSM002480.67678710IPR002110Ankyrin repeat
PROSITE profilePS500889.057678710IPR002110Ankyrin repeat
SMARTSM00248290717746IPR002110Ankyrin repeat
SuperFamilySSF525403.72E-8849902IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000151.5851873IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.627853881IPR000048IQ motif, EF-hand binding site
PfamPF006120.0056853872IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0041874896IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.651875899IPR000048IQ motif, EF-hand binding site
PfamPF006121.3E-4876896IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1033 aa     Download sequence    Send to blast
MAEMQKYGLS NPPPDIPEIL LEAQNRWLRP TEICQILYNY KKFSIAPEPP NRPPSGSLFL  60
FDRKILRYFR KDGHIWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEEN ENFQRRTYWL  120
LEEGFMNIVL VHYLDIKGGK QSFSRSKEAE EIARLSTDDS PACSNSFASQ SQVASQTMDA  180
ESPISGQISE YEDAETDYNR ASSRYHPFVE MQQPVDGVMM DNLLGAPAPS TCVNNLAAGY  240
QGEMQAATAD LNNHYVTHHG IANAFNGAGA GLRSGSKSPL DSVHFSEAFP EYSTGLMEPT  300
LHSSVATMGS NNLDDNSRLE TFMTEELYTN NLTQSEADAL SAAGMTSSQV QSDNYADGSI  360
GYPLLKQSSL DLFKIEPNGL KKFDSFTRWM SDELAEVADL GIKSSSDAFW SSTETVNVAD  420
GSSIPINEQL DAYVVSPSLS QDQLFSIIDV SPSWAYSVSV IKVLITGTFL TNKENVENCK  480
WSCMFGDVEV PAEVLADGSL RCYTPVHQSG RVPFYVTCSN RVACSEVREF EFCDSETQYM  540
EADPHTTGIN DMHLRIRLDK LLSLGPDDYE KYVLSDGNDK HELVSTIGAL MLDDKFTNLA  600
LPSDEKDFSA AQDKNLEKLV KDKLYCWLIH KIHDDGKGPN VLGKEGQGVI HLVAALGYDW  660
AIRPIITAGV PVNFRDARGW TALHWAASCG RERTVGSLIT NGAASGALTD PTPQFPSGRT  720
PADLASENGH KGIAGFLAES ALTSHLSALT LKESQGCNAE KICGISEVHG FAEPSSAQLA  780
CQDSEAESLK DSLSAVRKST QAAARIFQAF RVESFHRKKV VEYGDDDCGL SDERTLSLVS  840
LKNAKSGQND MPHSAAVRIQ NKFRGWKGRK EFMIIRQKII KIQAHVRGHQ VRRNYRKVVW  900
SVGIVEKVIL RWRRKGRGLR GFQPEKQLEG PSQIEPAKDE DEYDFLKDGR KQAEGRLQRS  960
LARVKSMTNY PEAREQYSRL QACVTELQDT KEKQDKMLIE AAGADGGDFM VDLEDLCEDA  1020
AGHTPTSTIL RR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G053300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235561.10.0calmodulin-binding transcription activator 3 isoform X3
TrEMBLA0A0Q3GW360.0A0A0Q3GW36_BRADI; Uncharacterized protein
STRINGBRADI1G21372.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.21e-180Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains