PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G047200.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 650aa    MW: 75347.8 Da    PI: 8.445
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G047200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.63.1e-2652139191
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                         +fYn+YA +vGFsvrks+s+ks  ++ ++ rtfvCs+eg+++++k+   +++++r  tr+gC a+l +k + + k++vt+++ eHnH+lap
  Brast06G047200.2.p  52 EFYNKYAGHVGFSVRKSTSHKS-SEKITKVRTFVCSREGYNRDKKSL--EAKKPRLDTRIGCPARLIIKVTPECKYRVTDFKAEHNHQLAP 139
                         6********************9.5555889*************9988..99*************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-2352139IPR004330FAR1 DNA binding domain
PfamPF105513.5E-27262356IPR018289MULE transposase domain
PfamPF044349.8E-7538576IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.089541577IPR007527Zinc finger, SWIM-type
SMARTSM005752.1E-6552579IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MRLLVQFNSF PKVDRGKMRR MIEAEPPIDE ASLAKLVPEV DMEFESEEKS YEFYNKYAGH  60
VGFSVRKSTS HKSSEKITKV RTFVCSREGY NRDKKSLEAK KPRLDTRIGC PARLIIKVTP  120
ECKYRVTDFK AEHNHQLAPP STMHMLRSQR ILTELQSGEA ELSDDSVATP TTKATGDLVV  180
RQVGFLRSIS LLPADYKNYL RSKRMKAMQL GDGGAILKYL QTMQMDNPSF FYTMQIDEDD  240
KLTNFFWADP KSRDDFSYFN DVLCLDTTYK INGYGRPLSL FLGVNHHRQT IIFGAALLYD  300
ESFESFKWLF ESFKIAMHGK QPKVALIDQS VQLSSAMASA WPNTTQRICT WHVYQNSVKH  360
LNHVFQGSKT FAKDFSKCVF GYEEEEEFVF AWRSMLEKYD LRHNEWLSKL FEERERWALA  420
YDRHIFCADI ISSLQAESFS SVLKKFLSPQ LDLLSFFKHY ERAVDEHRYA ELQADFQASQ  480
SYPRIPPAKM LKQTSHTYTP VVFEIFRKEF ELFMDSVLFS CGEAGTTSEY KVAPSEKPKE  540
HYVRFDSSDS SCMCTCRKFE FMGIPCCHML KVLDYRNIKE LPQTYLLKRW RRTAKSTNED  600
SQGHATNDNR PPLSTSVPSA NHHKLQSINT RIQDSSISNM HENPFHRSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G047200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3583410.0AK358341.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1074F13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235320.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_010235328.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLI1GS560.0I1GS56_BRADI; Uncharacterized protein
STRINGBRADI1G20830.20.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-111FAR1-related sequence 5