PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G043900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 649aa    MW: 71074.8 Da    PI: 4.6867
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G043900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.7e-133175348
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +W+ eEd+ l   ++ +G+++W+ Ia  +   +t+ qc+ rw++yl
  Brast06G043900.1.p 31 SWSSEEDDVLRSQIAHHGTDNWTIIATQFK-DKTARQCRRRWYNYL 75
                        6****************************9.**************7 PP
2Myb_DNA-binding41.43.4e-1381124146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +g W+ eEd ll +a k+lG++ W+ Ia+ +  gRt++ +k+r+ +
  Brast06G043900.1.p  81 KGGWSREEDMLLCEAQKLLGNK-WTEIAKVVS-GRTDNAVKNRFST 124
                         688*******************.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.1832479IPR017930Myb domain
SuperFamilySSF466894.49E-2628122IPR009057Homeodomain-like
SMARTSM007176.5E-122877IPR001005SANT/Myb domain
CDDcd001676.01E-123175No hitNo description
PfamPF139211.8E-153292No hitNo description
Gene3DG3DSA:1.10.10.602.9E-193282IPR009057Homeodomain-like
PROSITE profilePS5129416.91480130IPR017930Myb domain
SMARTSM007171.3E-1380128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-1983129IPR009057Homeodomain-like
CDDcd001671.00E-984125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
METGPDLSSS SSPAAAAASS AAAKKDRHIV SWSSEEDDVL RSQIAHHGTD NWTIIATQFK  60
DKTARQCRRR WYNYLNTECK KGGWSREEDM LLCEAQKLLG NKWTEIAKVV SGRTDNAVKN  120
RFSTLCKRRS KDDELIEENG SLCSNEKTKR MLTQTGDLSS SVPGSSLSIK QMRSCKPDFK  180
ENIAPNMRSF GQEKSLQQHS RQPLANISPN NQHNGNIVGT QSDVAKDSTM QLRGNGKICV  240
KNEGNFLKSN DPKFATLLQQ ADLLSSLATK LNTENTSQSM DEAWQQLQHH LVKKEDNEML  300
ESSISGTASL LEELDDLIVD PYENEEEDER KEQNGQTDVS SKHSNGPLET SMQVTSQMAP  360
DMEIDICPID KSTSDSSLCG NLLSSTPGAE ITASVNLGEA AEDSGLYCME YSSPAHVVLQ  420
AKADAEIPAA KILSEAAEGS WSQFMEYTSP AQTVVHAKAD VEIPVSINLS EAAEGSWHQR  480
MEYMSPAHTL LRAKADEEIP ASVNSSEPAK DCSLQYTEYT SPGHTDLRAA DVEILDNSSE  540
IPQDSNLECI KFTSPARTAI EGKPEAEMPA LENCSEVAKD RSTQPCMEFT SPAHTVPTFQ  600
RYTDDVPTPK ITASERNFLL SVLGLTSPGS KTDTSQQPSC KRALLNSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-283212910107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00259DAPTransfer from AT2G02820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G043900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235205.10.0transcription factor MYB124 isoform X1
TrEMBLA0A0Q3NDA40.0A0A0Q3NDA4_BRADI; Uncharacterized protein
STRINGBRADI1G20586.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89033847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.27e-72MYB family protein