PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G040200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 298aa    MW: 31502.2 Da    PI: 6.5034
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G040200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.4e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg W++eEde+l++ ++++G+g+W+++++  g+ R++k+c++rw +yl
  Brast06G040200.1.p 14 RGLWSPEEDEKLLNHIAKFGNGCWSSVPKIAGLERCGKSCRLRWINYL 61
                        788*******************************************97 PP
2Myb_DNA-binding513.4e-1667112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+++++E+el+v ++  lG++ W+ Ia+ ++ gRt++++k++w+++l
  Brast06G040200.1.p  67 RGAFSAQEEELIVSLHSVLGNK-WSQIAAQLP-GRTDNEVKNFWNSFL 112
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-24964IPR009057Homeodomain-like
PROSITE profilePS5129418.566961IPR017930Myb domain
SuperFamilySSF466897.49E-2911108IPR009057Homeodomain-like
SMARTSM007173.2E-131363IPR001005SANT/Myb domain
PfamPF002498.2E-161461IPR001005SANT/Myb domain
CDDcd001679.57E-121761No hitNo description
PROSITE profilePS5129425.3962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-2565116IPR009057Homeodomain-like
SMARTSM007171.3E-1466114IPR001005SANT/Myb domain
PfamPF002494.6E-1467111IPR001005SANT/Myb domain
CDDcd001673.83E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MAKRAGGAKK RLRRGLWSPE EDEKLLNHIA KFGNGCWSSV PKIAGLERCG KSCRLRWINY  60
LRPDLKRGAF SAQEEELIVS LHSVLGNKWS QIAAQLPGRT DNEVKNFWNS FLKKKLRSRG  120
IDPATHKPLA RLSPAPVFPD AAAELLLLQA PPSMAPPPPL ETCCYAYGGS DGGHGFVIPS  180
VSSSSTLSSM AAGGGLSSSG GGAATEEQCS GGGGFESSGT QQSGGMPWLE LGGGSISSYS  240
TAGAGDDDLQ YELRWSDYVF DGGYQQCAAD AIYDHDKADD PAAQSFDAHG GVSWCLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-28121165108B-MYB
1h8a_C1e-271211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKKLRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G040200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3537851e-127AK353785.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1002L23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559914.11e-125myb-related protein Hv33
TrEMBLI1GRY51e-124I1GRY5_BRADI; Uncharacterized protein
STRINGBRADI1G20250.11e-125(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30923385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G57560.12e-66myb domain protein 50