PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G035900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 316aa    MW: 34889.2 Da    PI: 7.2602
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G035900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.94.4e-35341262103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+ye+++d+ +++++sw e++ +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg k+
  Brast06G035900.1.p  34 FLSKTYELVDDPCTDHIVSWGEDEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGAKH 115
                         9****************************************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll +i+r+ks+
  Brast06G035900.1.p 116 LLAEIHRRKSS 126
                         ********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.1E-5630123IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.62E-3331123IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.8E-3731123IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.2E-193457IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.0E-3134123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-197284IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407397IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-198597IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAFLVERCGE MVVSMEPSAH GGGVGGGKAV PAPFLSKTYE LVDDPCTDHI VSWGEDEATF  60
VVWRPPEFAR DLLPNYFKHN NFSSFVRQLN TYGFRKIVAD RWEFANEFFR KGAKHLLAEI  120
HRRKSSQPPP PPLPHHHHGY HHGYHHHHHL GTAFSPPPLA HHHPMPSSYH FQDQEPPATA  180
ASMNNVSNGA AGSGGGEFLA ALSEDNRELR RRNSVLLSEL AHMKKLYNDI IYFLQNHVAP  240
VSPPSNLIPG IVNGGAASAA NVANSSCRLM ELDEEEGEDE AASVKLFGVA LKKKTTTTKR  300
ARRPEERFCD LGSQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-212112317129Heat shock factor protein 1
5d5v_B1e-212112317129Heat shock factor protein 1
5d5v_D1e-212112317129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G035900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0639521e-136AK063952.1 Oryza sativa Japonica Group cDNA clone:001-123-F07, full insert sequence.
GenBankAY3444941e-136AY344494.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559898.11e-155heat stress transcription factor B-4b
SwissprotQ7XHZ01e-107HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBLI1GRU91e-154I1GRU9_BRADI; Uncharacterized protein
STRINGBRADI1G19900.11e-155(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-85heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]