PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G019000.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 721aa    MW: 78250.4 Da    PI: 5.4528
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G019000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-054769123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ Cgk F r  nL+ H r H
  Brast06G019000.2.p 47 FVCEVCGKGFQRDQNLQLHRRGH 69
                        89******************988 PP
2zf-C2H2140.00015125146223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          Cp Cgk++  + +Lk H + +
  Brast06G019000.2.p 125 ACPRCGKRYAVQADLKAHAKAC 146
                         6*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.3E-84669No hitNo description
Gene3DG3DSA:3.30.160.601.6E-54769IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0144769IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6354769IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
SMARTSM0035511089119IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.7E-5112144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.3E-8119144No hitNo description
PROSITE profilePS501578.663124152IPR007087Zinc finger, C2H2
SMARTSM0035590124144IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MLPNPPEPQP AEAEAPAKKK RNLPGTPDPE AEVIALSPGT LMASNRFVCE VCGKGFQRDQ  60
NLQLHRRGHN LPWRLRQPGG AAPRRRRVYV CPDPGCVHHS PARALGDLTG IKKHFCRKHG  120
EKRWACPRCG KRYAVQADLK AHAKACGTRE YRCGCGTLFT RRDSFTTHRS FCGALGEETS  180
RVLAVPEQPS PRPPDLEELE QDVDKDKEKG EEDNVDRDQE NENEENSGEE KNDNSTVGKA  240
NEPRHNEEEA VTEESHCILS PPSPLPKEQQ PRVEVVPDVD EAQVVVEPIV DVKQEEEDKP  300
NDDVCFQEAY QYDCDELEDS NLPDNVVPML PCFLPLPSDA IGTDGSSTSC GTVSSASNSI  360
APATTTTSTF AGLFASATTS TTPQSRSLRD LIGVDPTFLC LAIGASSSLF PETSASNACT  420
FAPPPAPHMS ATALLQKAAE VGASQSSSSF LKGFGLASSS SSTPSREPQG RSIDSSTQSQ  480
LPQGFIDNST PFEQSPSIFI HNSLPCNLPQ GRFFDNTKLS SLPEGRFFDN SPPCNLPQGM  540
SSSYSPPSKL PLGQFIDNSS LPKLPQERHL DSSSLCKLPQ GRYIDRLPPS MLPKGRNIGS  600
SPPCNLQQGR FFNDSAQQRH HQSNRLMDMD PEPILPRSPG LAYNSASPRL PDLMMAQSSL  660
LGPKPVTQDF LGLGIRRTMG DFATNGGLPA LMVGGELNVE SSQVPPPMEE AKRKSNVRTI  720
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-26120182365Zinc finger protein JACKDAW
5b3h_F2e-26120182365Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G019000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234246.20.0protein indeterminate-domain 1 isoform X1
TrEMBLA0A0Q3JRS50.0A0A0Q3JRS5_BRADI; Uncharacterized protein
STRINGBRADI1G18370.20.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-86C2H2 family protein