PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G011400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 951aa    MW: 104477 Da    PI: 6.8599
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G011400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.84.6e-19368467198
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+kvl+ sd+++ grlvlpk +ae++   ++++e++ lt++d++g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++ 
  Brast06G011400.1.p 368 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDSKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRIE- 456
                         99**************************555567778***************9989999999***9.********************887. PP

                         SEE..EEEEE- CS
                  B3  88 sefelvvkvfr 98 
                          +++lv+++++
  Brast06G011400.1.p 457 PGGKLVMGFRK 467
                         77777877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-31360477IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-21365468IPR015300DNA-binding pseudobarrel domain
CDDcd100173.58E-24366467No hitNo description
SMARTSM010192.1E-21368468IPR003340B3 DNA binding domain
PROSITE profilePS5086311.561368469IPR003340B3 DNA binding domain
PfamPF023622.0E-16368467IPR003340B3 DNA binding domain
PROSITE profilePS5105014.632629679IPR011124Zinc finger, CW-type
PfamPF074967.5E-11634676IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 951 aa     Download sequence    Send to blast
MAMAMAAAAA VAKRCMNTAC GAAAPGVGAA GEWRKGWPLR SGGFAVLCDK CGLAYEQLVF  60
CDIFHPQESG WRDCSFCGKR LHCGCAASKI FYGLLDSGGV QCVNCMQNSR PQPVSCQVAP  120
KLFLSPNNQR LFGKSDELLP GRPLESPPLM LDSRNDDIAI VAKSNHPFMV KNIEPGQSSN  180
ILRQKEIENG ARQIKWEQPT LSIGDMGRMP FLIRAQSTLE SPQSQCTPRD DNRDPTADST  240
TSESLSEACL SMSLAIANNG NKTEATSTME RPSLSPTTLF SEGRELATSL SPFQHAQRAR  300
HYLTRPPRVA EGAAFDPMKD GFPHLRVARP PAEGRGRNQL LPRYWPRITD QELQQISGDS  360
NSTIVPLFEK VLSASDAGRI GRLVLPKACA EAYFPPISQP EGRPLTIQDS KGKEWHFQFR  420
FWPNNNSRMY VLEGVTPCIQ SLQLQAGDTV TFSRIEPGGK LVMGFRKATN TVSLPDSQIS  480
AIANGSLLGD TFFSSPSENL SIVSGYSGFL QSMKGATDHH PSSLFDHHAN SADGDVSWLK  540
TDRFGGRSDE GSLQFLQKRS RNIGSKSRRL LMDAEDALEL KLSWEEAQEL LRPAPSAKPT  600
VVMIEDYEFE EYDEPPVFAK RSIFTRRSTG EQDQWIQCDD CSKWRRLPLN VIIASKWTCP  660
DNTWDPKSCS CSTPQELATK DLHSILQQYE DIRRRKSSYF LKQNIPEMDA SSFDALAAAT  720
VFGEVGNQGA ASVATTTKHP RHRPGCTCIV CIQPPSGKGP KHNPACTCNV CMTVRRRFKT  780
LMMRKKQRQS EREEAEASKK ITWMSRDEPE GSSLSRSPQT LDTTRDGDVT MLDKVDMNKG  840
HIDLNFHPTS RDEVSMVGLL EVASRPLESY MKQNGLVSLA GEQASSSTQP PTAPPQAAPV  900
GSEERTPDEA RVMSVVEERE REPTDSMAVD EAAGENHGIA ATATDNAAAA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-663464701125B3 domain-containing transcription repressor VAL1
5yzz_C2e-663464701125B3 domain-containing transcription repressor VAL1
5z00_C2e-663464701125B3 domain-containing transcription repressor VAL1
5z00_G2e-663464701125B3 domain-containing transcription repressor VAL1
5z00_K2e-663464701125B3 domain-containing transcription repressor VAL1
5z00_M2e-663464701125B3 domain-containing transcription repressor VAL1
6j9a_A2e-663464702126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1774785RRRFKTLMMRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G011400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3586790.0AK358679.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1081G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562447.20.0B3 domain-containing protein Os07g0679700
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLI1GR460.0I1GR46_BRADI; Uncharacterized protein
STRINGBRADI1G17680.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65193748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]