PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast06G008700.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 484aa MW: 51700.1 Da PI: 7.185

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast06G008700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.3e-39	106	166	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rn+PvG+grrk+k+ss Brast06G008700.1.p 106 PDKILPCPRCKSMDTKFCYYNNYNVHQPRHFCKGCQRYWTAGGSMRNIPVGAGRRKSKSSS 166 7899*****************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-29	92	163	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.5E-32	108	164	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.295	110	164	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	112	148	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MEELAGAEPP LPPEESLVAP APPRTPPQPP VEVACKDTGG MRITKENPST QQEFDLGQTN 60 KSSLNNSTEC ENQDPNGDVR TEPESKSEAA KTEGDGSSRD KVLKKPDKIL PCPRCKSMDT 120 KFCYYNNYNV HQPRHFCKGC QRYWTAGGSM RNIPVGAGRR KSKSSSANCR SILIPGSSLA 180 APGGDASLIP FSVKGNEPVV KFGSDAPLCK SMASSMRVEE QNKISNPAST AHPINGENLT 240 CPPPTTTSDS QGTESVKGTV SAHQNGLTGD CNGVTPVHPI PCFPGPPFMY PWNPAWNGIP 300 AMAAPICPAQ AESGNSSENG NGVNVQWNLP PMVPVPGFCG PPIPFPLMPP SVWPFVSPWP 360 NGTWSAPWLG PGYSMPAAPP TSSITCSDSA SPVLGKHPRD SNLHGDEKSE KSLWIPKTLR 420 IHDPDEAAKS SIWTTLGIEP GHRGMFRPFH SKSGSKEQMS DAARVMQANP AAQSRFQSFQ 480 ETT*

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MEELAGAEPP LPPEESLVAP APPRTPPQPP VEVACKDTGG MRITKENPST QQEFDLGQTN  60
KSSLNNSTEC ENQDPNGDVR TEPESKSEAA KTEGDGSSRD KVLKKPDKIL PCPRCKSMDT  120
KFCYYNNYNV HQPRHFCKGC QRYWTAGGSM RNIPVGAGRR KSKSSSANCR SILIPGSSLA  180
APGGDASLIP FSVKGNEPVV KFGSDAPLCK SMASSMRVEE QNKISNPAST AHPINGENLT  240
CPPPTTTSDS QGTESVKGTV SAHQNGLTGD CNGVTPVHPI PCFPGPPFMY PWNPAWNGIP  300
AMAAPICPAQ AESGNSSENG NGVNVQWNLP PMVPVPGFCG PPIPFPLMPP SVWPFVSPWP  360
NGTWSAPWLG PGYSMPAAPP TSSITCSDSA SPVLGKHPRD SNLHGDEKSE KSLWIPKTLR  420
IHDPDEAAKS SIWTTLGIEP GHRGMFRPFH SKSGSKEQMS DAARVMQANP AAQSRFQSFQ  480
ETT*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast06G008700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010233788.1	0.0	cyclic dof factor 1
Refseq	XP_024313586.1	0.0	cyclic dof factor 1
TrEMBL	I1GR16	0.0	I1GR16_BRADI; Uncharacterized protein
STRING	BRADI1G17410.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-73	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Brast06G008700.1.p