PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast06G008600.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

G2-like

Protein Properties

Length: 319aa MW: 34817.1 Da PI: 8.5103

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast06G008600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106	2.2e-33	47	101	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt+eLHerFveav+qLGG++kAtPkti+++m+++gLtl+h+kSHLQk+Rl Brast06G008600.1.p 47 KPRLKWTSELHERFVEAVNQLGGPDKATPKTIMRVMGIPGLTLYHLKSHLQKFRL 101 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.084	44	104	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.8E-31	45	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.02E-17	46	102	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.2E-24	47	102	IPR006447	Myb domain, plants
Pfam	PF00249	8.5E-9	49	99	IPR001005	SANT/Myb domain
Pfam	PF14379	6.5E-24	148	194	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MYHQQQQQLH THSQHLSSRP SLSPEKKFLR QGQGGGDSGL ILSTDAKPRL KWTSELHERF 60 VEAVNQLGGP DKATPKTIMR VMGIPGLTLY HLKSHLQKFR LGKNPQTQPT VLNVKNVLGF 120 ATVTDKACEG HVSPADHLNR ETGTSKSMHI SETLQMQIEV QRRLHEQIEV QRHLQLRIEA 180 QGKYLHSVLE KAQEALAKNQ QAAGAGHEAG KPPAARHRLQ RNDGSADGSC LTAASDEGIL 240 SIGLSAAAAG AGARRAAVPP LEKPARSSSG RDRGPEEEEE EECYLFLGKP EHHEERIKLG 300 LSIGGGERID LNGSSWND*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-19	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-19	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-20	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-20	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-20	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-20	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-19	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-19	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-19	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-19	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-19	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-19	47	103	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast06G008600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010233783.1	0.0	myb-related protein 2
Swissprot	Q9FK47	1e-70	PHLA_ARATH; Myb-related protein 1
TrEMBL	A0A0Q3KTX3	1e-180	A0A0Q3KTX3_BRADI; Uncharacterized protein
STRING	BRADI1G17400.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3574	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	6e-71	myb-related protein 1

Link Out ? help Back to Top
Phytozome	Brast06G008600.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]