PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G005100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 356aa    MW: 38951.1 Da    PI: 7.3275
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G005100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.28.9e-09303351146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 
                         r++W++  ++ l ++v++ G+g+Wk I    +     R+  + k+++++
  Brast06G005100.1.p 303 RKKWSEMQEKTLMEGVEKCGKGNWKEIKIAYPdvfGDRSTVDMKDKFRN 351
                         789*****************************99999**9999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.744298355IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-9299352IPR009057Homeodomain-like
SuperFamilySSF466893.51E-12300352IPR009057Homeodomain-like
SMARTSM007171.8E-5302355IPR001005SANT/Myb domain
PfamPF002498.8E-8303352IPR001005SANT/Myb domain
CDDcd116603.56E-18304354No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MPPLAAADAF LVLEFVAGNR LVPPPVFAAL LASLPSVSPH TSPRLRRGIA LRALDAVFSL  60
SDADADASIL LHKARAVLAD PDLASCFPDR LTLPVACDDE AALVDLKRLV DVQWADLPPS  120
TLEFAADRIA GAGALHTWAN ADQDTRQKLR LLVGGSMELD ILGKLGPDPS KVDKGASTSG  180
ADEAGFTRES GKSDHDQEGC TRRRQDPAKR TTDAQLTQNL VTSATIKGKD KATSSYVTGL  240
VAPDNHKSHP EIGSKRGLME RSHTTTVYEW DDLGDSDHER VPHKRQLPTY KRKPEPSFPH  300
KSRKKWSEMQ EKTLMEGVEK CGKGNWKEIK IAYPDVFGDR STVDMKDKFR NMERQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G005100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559737.10.0uncharacterized protein LOC100834855
RefseqXP_010233480.10.0uncharacterized protein LOC100834855
TrEMBLI1GQT30.0I1GQT3_BRADI; Uncharacterized protein
STRINGBRADI1G16355.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139982224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.13e-09TRF-like 5