PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G288500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 649aa    MW: 68869.9 Da    PI: 6.7982
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G288500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS401.39.4e-1232656362374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPi 90 
                          +lLl+cAe v++++l  aqa+L ++ ela+p g+++qR+aayf+eA +arl+ s+ +ly+ +pp +++ +     + +aa+++f+ +sP+
  Brast05G288500.1.p 265 LTLLLQCAESVNADNLDDAQAALLEIAELATPFGTSTQRVAAYFAEAVSARLVTSCLGLYAPIPPHSAAASItgGRKIAAAFQVFNGISPF 355
                         579************************************************************888777655678899999********** PP

                GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                         +kfsh+taNqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+g+    s ++le+tg+rL++fA++lg+pfef + 
  Brast05G288500.1.p 356 VKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGA----SMDALEATGKRLSDFADTLGLPFEFCA- 441
                         ***********************************************************....***************************. PP

                GRAS 182 vakrledleleeL.........rvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                         va++  +l++++L            + +Ea+aV++ +  h+l+d +++ ++    +L l+++l Pkvv++veq+++h s+sFl+rf+ea++
  Brast05G288500.1.p 442 VADKAGNLDPDKLlngsggggmVA-RrREAVAVHWLH--HSLYDVTGNDAN----TLGLIQRLAPKVVTMVEQDLSH-SGSFLARFVEAIH 524
                         7************99888887444.35*********9..999999999998....**********************.899********** PP

                GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353
                         yysalfdsl+a+++++s er++vE++ll+rei+nv+a  g +r+ + + +++Wr+rl ++GF+p++l  +aa+qa lll +++sdgy++ e
  Brast05G288500.1.p 525 YYSALFDSLDASYGEDSPERHVVEQQLLSREIRNVLAVGGPARTGDAKFVGSWRDRLARSGFGPASLAGSAAAQAALLLGMFPSDGYTLVE 615
                         ******************************************************************************************* PP

                GRAS 354 esgslvlgWkdrpLvsvSaWr 374
                         e+g+l lgWkd  L+++SaWr
  Brast05G288500.1.p 616 ENGALKLGWKDLCLLTASAWR 636
                         ********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.564238616IPR005202Transcription factor GRAS
PfamPF035143.3E-120265636IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MGSLFFPSSS SSSPASSSSY PPSHASDPAF LHHRPLDHHH QYQQHAAAMV RKRPAPDMDN  60
LPPPRRHVTG DLSDVLAAAA PPAAQQQQLP TAQLPALPAQ LLPPPTPFQH HQQQQQAAEQ  120
HHHMDVAAAN PGGAAATTAF VDGIIRDIIG SCHGGGHGVS VAQLIHNVRE IIHPCNPALA  180
SLLELRLLDL PQPPPPHPSL LPPVSPPPPP PPPALPPPDK LPAGSPPSPK PPSAEQAAAA  240
AQAAAKDRRE SQRRKQRDEE GLHLLTLLLQ CAESVNADNL DDAQAALLEI AELATPFGTS  300
TQRVAAYFAE AVSARLVTSC LGLYAPIPPH SAAASITGGR KIAAAFQVFN GISPFVKFSH  360
FTANQAIQEA FEREDRVHII DLDIMQGLQW PGLFHILASR PGGPPRVRLT GLGASMDALE  420
ATGKRLSDFA DTLGLPFEFC AVADKAGNLD PDKLLNGSGG GGMVARRREA VAVHWLHHSL  480
YDVTGNDANT LGLIQRLAPK VVTMVEQDLS HSGSFLARFV EAIHYYSALF DSLDASYGED  540
SPERHVVEQQ LLSREIRNVL AVGGPARTGD AKFVGSWRDR LARSGFGPAS LAGSAAAQAA  600
LLLGMFPSDG YTLVEENGAL KLGWKDLCLL TASAWRPMVH TTPSSSAR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.02486373380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250, ECO:0000269|PubMed:17446396}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G288500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239549.20.0protein SCARECROW
SwissprotQ2RB590.0SCR1_ORYSJ; Protein SCARECROW 1
TrEMBLA0A2K2CU340.0A0A2K2CU34_BRADI; Uncharacterized protein
STRINGMLOC_64716.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-174GRAS family protein